| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,423,346 – 19,423,397 |
| Length | 51 |
| Max. P | 0.547533 |
| Location | 19,423,346 – 19,423,397 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 89.43 |
| Shannon entropy | 0.17788 |
| G+C content | 0.44258 |
| Mean single sequence MFE | -11.92 |
| Consensus MFE | -10.20 |
| Energy contribution | -10.44 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19423346 51 - 24543557 UAUGAAUAUGAAUGAGGGCCUCAUACAAUUAGCCGGCUAAAGAGCUGAGCC----- ........((.(((((...))))).))....(((((((....))))).)).----- ( -11.50, z-score = -1.09, R) >droSim1.chr3L 18752522 51 - 22553184 UAUGAAUAUGAAUGAGCGCCUCAUACAAUUAGCCGGCUAAAGAGCUGAGCC----- ........((.(((((...))))).))....(((((((....))))).)).----- ( -11.50, z-score = -1.56, R) >droSec1.super_29 125398 51 - 700605 UAUGAAUAUGAAUGAGGGGCUCAUACAAUUAGCCGGCUAAGGAGCUGAGCC----- .................((((((.....((((....)))).....))))))----- ( -11.60, z-score = -0.79, R) >droYak2.chr3L 3064906 56 + 24197627 UAUGAAUAUGAAUGAGAGGCUCUUACAAUUAGCCAGCUAAAGAGCUGAGCUGAGCC .................(((((........((((((((....))))).)))))))) ( -15.90, z-score = -2.46, R) >droEre2.scaffold_4784 19228840 51 - 25762168 UAUAAAUAUGAAUGAGAGCCUCUUACAAUUAGCCGGCUAAAGAGCUGAGCC----- ............((((.....))))......(((((((....))))).)).----- ( -9.10, z-score = -0.82, R) >consensus UAUGAAUAUGAAUGAGAGCCUCAUACAAUUAGCCGGCUAAAGAGCUGAGCC_____ ........((.(((((...))))).))....(((((((....))))).))...... (-10.20 = -10.44 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:42 2011