| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,417,723 – 19,417,777 |
| Length | 54 |
| Max. P | 0.527839 |
| Location | 19,417,723 – 19,417,777 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 79.88 |
| Shannon entropy | 0.27926 |
| G+C content | 0.37419 |
| Mean single sequence MFE | -7.03 |
| Consensus MFE | -5.60 |
| Energy contribution | -5.93 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.527839 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19417723 54 - 24543557 UACCAAAAUAUUUUGCAUCGAAUCCGCAAAGUUCAACGCACACAGGA-AAAUCGA .........(((((((.........)))))))...............-....... ( -4.20, z-score = 0.38, R) >droSec1.super_29 113801 55 - 700605 UAUAAACGCAUUCUGCAUCGAAUUCACACAGUUCCAUGCACACAAAACAAAGUGA .............(((((.(((((.....))))).)))))(((........))). ( -9.30, z-score = -1.99, R) >droSim1.chr3L 3809611 54 + 22553184 UAUAAACACAUUCUGCAUCGAAUUCACAAAGUUCCAUGCACACAAAA-AAAGGGA .............(((((.(((((.....))))).))))).......-....... ( -7.60, z-score = -2.07, R) >consensus UAUAAACACAUUCUGCAUCGAAUUCACAAAGUUCCAUGCACACAAAA_AAAGCGA .............(((((.((((.......)))).)))))............... ( -5.60 = -5.93 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:41 2011