| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,724,551 – 5,724,658 |
| Length | 107 |
| Max. P | 0.500000 |
| Location | 5,724,551 – 5,724,658 |
|---|---|
| Length | 107 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 74.35 |
| Shannon entropy | 0.42753 |
| G+C content | 0.53952 |
| Mean single sequence MFE | -30.14 |
| Consensus MFE | -15.72 |
| Energy contribution | -18.12 |
| Covariance contribution | 2.40 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 5724551 107 + 23011544 AACCGGAGCGGCCCAUGCAACUAAUCGAUAUCCGCAGCCGGGCAACGAUGAUGGAUAGAUAGAUAAAUACAUCGAUAGUAUCGGCUUGUCAUCGGCCCGCUGCCACC- ....(((.(((.............)))...)))(((((.((((..((((((..(...(((((((......))).....))))...)..)))))))))))))))....- ( -31.62, z-score = -0.45, R) >droSec1.super_5 3803470 95 + 5866729 AACCGGAGCGGUCCUUGCAACUAAUCGAUAUCCGCAGCCGGGCAUCGAUGUUGGAUA------------CAUCGAUAGUAUCGACUGGUCAUCGGCCCGCUACCACC- ....(((((((.((.....((((.((((((((((....)))..((((((((.....)------------))))))).))))))).))))....)).))))).))...- ( -35.90, z-score = -2.53, R) >droSim1.chr2L 5520237 95 + 22036055 AUCCGGAGCGGUCCUUGCAACUAAUCGAUAUCCGCAGCCGGGCAUCGAUGCUGGAUA------------CAUCGAUAGUAUCGACUUGUCAUCGGCCCGCUACCACC- ....(((((((.((..(((.....(((((..(((....)))..))))))))..((((------------..(((((...)))))..))))...)).))))).))...- ( -32.70, z-score = -1.70, R) >droYak2.chr2L 8856951 94 - 22324452 AGAAGUUGCAACCCUUGCAAGUAAUCGACUCUCCCAGUCGUGUAUCGAUGCUUGUAA------------CACCGAUAGUAUCGG-UGGUUAUCGUCCCGCCUCCACC- .......((.....(((((((((.((((..(.(......).)..)))))))))))))------------(((((((...)))))-))...........)).......- ( -23.20, z-score = -1.70, R) >droEre2.scaffold_4929 5814557 91 + 26641161 AGCAGGAGCAACCCUUGAAAGCCAUCGAUU----CAGCAGGGUAUCGAUGCCAGAAA------------CAACGAUGCUAUCGACUGGU-AUCGGCCCGCUUCCACCU ....(((((.(((((((((.........))----))..))))).((((((((((...------------...((((...)))).)))))-)))))...)))))..... ( -27.30, z-score = -1.34, R) >consensus AACCGGAGCGGCCCUUGCAACUAAUCGAUAUCCGCAGCCGGGCAUCGAUGCUGGAUA____________CAUCGAUAGUAUCGACUGGUCAUCGGCCCGCUACCACC_ ....(((((((.((.........((((((.(((......))).))))))......................(((((...))))).........)).))))).)).... (-15.72 = -18.12 + 2.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:43 2011