| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,390,015 – 19,390,065 |
| Length | 50 |
| Max. P | 0.694368 |
| Location | 19,390,015 – 19,390,065 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 80.80 |
| Shannon entropy | 0.32776 |
| G+C content | 0.43200 |
| Mean single sequence MFE | -12.96 |
| Consensus MFE | -7.04 |
| Energy contribution | -5.76 |
| Covariance contribution | -1.28 |
| Combinations/Pair | 1.55 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694368 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19390015 50 + 24543557 UCGUGAGAGUGUAUACUCCGCAAGGAGAGUUUUUGUUUACAUUAACUACG ((....)).......((((....))))((((..((....))..))))... ( -14.70, z-score = -2.97, R) >droEre2.scaffold_4784 19202868 50 + 25762168 UCGUGAAAGUGUAUGCUUCACCCGGAGAGCUCCGGAAUACAUUAACUGCG ..(((((.((....)))))))(((((....)))))............... ( -13.00, z-score = -1.56, R) >droYak2.chr3L 3037760 50 - 24197627 UCGUUAAAGUGUAUACUGCACCCGGAGAGCUCCGGAAUACAUUAAGUUCG ........((((.....))))(((((....)))))............... ( -11.10, z-score = -1.26, R) >droSec1.super_29 90818 50 + 700605 UCGUGAGAGUAUAUGCUCCGCAAGGAGAGAUUUUGUUUACAUUAACUACG ..(((((........((((....))))........))))).......... ( -12.99, z-score = -2.54, R) >droSim1.chr3L 18715277 50 + 22553184 UCGUGAGAGUAUAUGCUCCGCAAGGAGAGAUUUUGUUUACAUUAACUACG ..(((((........((((....))))........))))).......... ( -12.99, z-score = -2.54, R) >consensus UCGUGAGAGUGUAUGCUCCGCAAGGAGAGAUUUUGUUUACAUUAACUACG ..(((.((((....))))))).((((....))))................ ( -7.04 = -5.76 + -1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:38 2011