| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,383,634 – 19,383,739 |
| Length | 105 |
| Max. P | 0.600553 |
| Location | 19,383,634 – 19,383,739 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 85.74 |
| Shannon entropy | 0.28308 |
| G+C content | 0.42615 |
| Mean single sequence MFE | -27.29 |
| Consensus MFE | -16.13 |
| Energy contribution | -15.17 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.10 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19383634 105 + 24543557 ------CGCUGAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAAGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUUUGAGCACGCAGAC------ ------.((((((((((.....)))))).))))((....((.....))....(((((((((.(......)...(.((((((....)))))).).)))))))))..))....------ ( -31.20, z-score = -3.15, R) >droSim1.chr3L 18708510 105 + 22553184 ------CGCUGAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAGGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUUUGAGCACGCAGAC------ ------.((((((((((.....)))))).))))((....((.....))....(((((((((.(......)...(.((((((....)))))).).)))))))))..))....------ ( -30.90, z-score = -2.92, R) >droSec1.super_29 84696 105 + 700605 ------CGCUGAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAGGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUUUGAGCACGCAGAC------ ------.((((((((((.....)))))).))))((....((.....))....(((((((((.(......)...(.((((((....)))))).).)))))))))..))....------ ( -30.90, z-score = -2.92, R) >droYak2.chr3L 3019128 105 - 24197627 ------CGCUGAAGUGUUCACAACACUUCCGGCGCAUAAUGAAAAACAAAAGGCUUAAAAGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUUUGAGCACGCAGAC------ ------.((((((((((.....)))))).))))((....((.....))....(((((((((.(......)...(.((((((....)))))).).)))))))))..))....------ ( -29.90, z-score = -2.62, R) >droEre2.scaffold_4784 19196282 105 + 25762168 ------CGCUGAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAGAAGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUUUGAGCACGCAGAC------ ------.((((((((((.....)))))).))))((....((.....))....(((((((((.(......)...(.((((((....)))))).).)))))))))..))....------ ( -31.30, z-score = -3.07, R) >droAna3.scaffold_13337 5210126 105 - 23293914 ------CGCCAAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAAGGGGAUACACAAUGGAUUUGAGCAAUCAAGUGCGCUUUCGAGCACCCCGAC------ ------.(((.((((((.....))))))..)))((....((.....))....))......((((.........(.((((((....)))))).)(((....))).))))...------ ( -30.60, z-score = -2.53, R) >dp4.chrXR_group8 7476492 105 + 9212921 ------GUCUGAAGUGUUUACAACACUUCCGGCAUAUAAUGGAAAACAAAAGGCUUAAAAGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUCUGAGAGCGCAGAC------ ------(((.(((((((.....))))))).)))...................(((((((...(......)......))))))).......(((((((....)))))))...------ ( -26.50, z-score = -1.92, R) >droPer1.super_48 255182 105 + 581423 ------GUCUGAAGUGUUUACAACACUUCCGGCAUAUAAUGGAAAACAAAAGGCUUAAAAGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUCUGAGAACGCAGAC------ ------(((.(((((((.....))))))).)))...................((((...(((((.........(.((((((....)))))).).)))))...)).))....------ ( -23.30, z-score = -1.21, R) >droWil1.scaffold_180727 2073954 105 - 2741493 ------UGUUGAAGUGUUUACAACACUUCCGGCAUAUAAUGGAAAACAAAAGGCUUAAAAGG--AUACACAAAAGAUUUGAGCAAUCAAGUGCGUCUUUAAACAGGCCGAAUC---- ------(((((((((((.....)))))).))))).................(((((..((((--(..(((.......((((....)))))))..)))))....))))).....---- ( -24.41, z-score = -2.27, R) >droVir3.scaffold_13049 12264679 109 - 25233164 ------UUUUUAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAAGG--AUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUUAAGAACUUUUGCCCCAUCC ------.....((((((.....))))))..........((((....((((((.((((((.(.--.....)...(.((((((....)))))).)..))))))..))))))..)))).. ( -20.70, z-score = -0.18, R) >droMoj3.scaffold_6680 14418573 115 + 24764193 CUUGCCUUUUGAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAAGG--AUACACAAAGGAUUUGAGCAAUCAAGUACGCUUUAAGAACUUUUGCCCCAUCC ...((((((((..((((.....))))(((((........)))))..))))))))......((--((...((((((((((((....)))))).(.......)..))))))....)))) ( -28.20, z-score = -1.98, R) >droGri2.scaffold_15110 921184 109 - 24565398 ------UCUUUAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAAGG--AUACACAAAGGAUUUGAGCAAUCAAGUACGCUUUAAGAACUUUUGCCUCAUCC ------.......((((.....))))(((((........)))))......((((..(((((.--......(((((((((((....)))))).).)))).....)))))))))..... ( -19.60, z-score = -0.42, R) >consensus ______CGCUGAAGUGUUUACAACACUUCCGGCGCAUAAUGGAAAACAAAAGGCUUAAAAGGGGAUACACAAAGGAUUUGAGCAAUCAAGUGCGCUUUUGAGCACGCAGAC______ .......((((((((((..((.....(((((........)))))........(((((((.................)))))))......)))))))))..))).............. (-16.13 = -15.17 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:38 2011