| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,361,824 – 19,361,914 |
| Length | 90 |
| Max. P | 0.726621 |
| Location | 19,361,824 – 19,361,914 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 75.43 |
| Shannon entropy | 0.44235 |
| G+C content | 0.51860 |
| Mean single sequence MFE | -22.78 |
| Consensus MFE | -11.89 |
| Energy contribution | -11.55 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726621 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19361824 90 + 24543557 UCCUUCAUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGCGCAUUCCCCGAUCCCGUCGCCCUCU--UUU-UGGCACCUGUGCGCGCUUA---UACG------------ ......(((((((((........))))))))).....((((((.....(((...)))(((....--...-.)))....)))))).....---....------------ ( -21.20, z-score = -2.21, R) >droPer1.super_48 237855 108 + 581423 UCCAUCUUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGCGCUCCACCGUCCCUCUGCCCCCUCUGCCCCCUCGCACCUGUGCAGAAGCAGCGUGAGCAUGAUUAUGGG .((((.(..(((...(((((((((..((((.....)))).............(((((......(((......))).....))))))).))))))))))..)..)))). ( -28.40, z-score = -1.24, R) >dp4.chrXR_group8 7459146 101 + 9212921 UCCAUCUUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGCGCUCCACCGCCCCUCUGCCCC-------CCCUCGCACCUGUGCAGAAGCAGCGUGAGCAUGAUUAUGGG .((((.(..(((...(((((((((.((((((...(.((((.......((......))...-------....)))).)))))))..)).))))))))))..)..)))). ( -28.14, z-score = -1.46, R) >droAna3.scaffold_13337 5193188 91 - 23293914 UCCUUCUUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGCACCCACCCAUCCUACCUAUCCCUCC--UCGAUGGCACCUGUGCAGGCUUA---UGGG------------ ........((((((..((.((.....)).))....))))))...((((((((...((((.....--..))))(((....))))))...)---))))------------ ( -20.00, z-score = -1.20, R) >droEre2.scaffold_4784 19174284 90 + 25762168 UCCUUCAUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGUGCUUUCCCCGAUCCCGUCGCCCUCU--UUU-UGGCACCUGUGCGCGCUUA---UGAG------------ ....(((((((((((...((......((((((...))))))......))........(((....--...-.)))...)))))))....)---))).------------ ( -18.10, z-score = -1.13, R) >droYak2.chr3L 2997851 90 - 24197627 UCCUUCAUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGUGCAUUCCCCGAUCCCGUCACCCUCU--UUU-GGGCACCUGUGCGCGCUUA---UAAG------------ ........(((((((...((....((((((((...))))))))....)).........(((...--...-)))....))))))).....---....------------ ( -20.90, z-score = -1.94, R) >droSec1.super_29 63413 90 + 700605 UCCUUCAUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGCGCAUUCCCCGAUCCCGUCGCCCUCU--UUU-UGGCACCUGUGCGCGCUUA---UGCG------------ ......(((((((((........))))))))).....((((((.....(((...)))(((....--...-.)))....))))))((...---.)).------------ ( -23.00, z-score = -2.24, R) >droSim1.chr3L 18687019 90 + 22553184 UCCUUCAUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGUGCAUUCCCCGAUCCCGUCGCCCUCU--UUU-UGGCACCUGUGCGCGCUUA---UGCG------------ ........(((((((...((....((((((((...))))))))....))........(((....--...-.)))...)))))))((...---.)).------------ ( -22.50, z-score = -2.37, R) >consensus UCCUUCAUGUGCAUAUUACGCUCUAUGCAUAUUUGAUGCGCAUUCCCCGAUCCCGUCGCCCUCU__UUU_UGGCACCUGUGCGCGCUUA___UGAG____________ ........((((((..((.((.....)).))....))))))...............................(((....))).......................... (-11.89 = -11.55 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:35 2011