| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,342,601 – 19,342,700 |
| Length | 99 |
| Max. P | 0.695558 |
| Location | 19,342,601 – 19,342,700 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.75 |
| Shannon entropy | 0.33714 |
| G+C content | 0.38319 |
| Mean single sequence MFE | -24.02 |
| Consensus MFE | -17.90 |
| Energy contribution | -17.97 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.695558 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19342601 99 + 24543557 UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAACACGAAUCGCUCUGCACUCUGCCAAAAAAUUCCC--------------------- ............(((((((((((.(((((((((((((((((.......))))))))......))))))...)))..))))).)).))))..........--------------------- ( -24.50, z-score = -1.71, R) >droSim1.chr3L 18667254 99 + 22553184 UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAACACGAAUCACUCUGCACUCUGCCAAAAAAUUCCC--------------------- ............(((((((((((..((((((((((((((((.......))))))))......))))))...))...))))).)).))))..........--------------------- ( -21.80, z-score = -1.07, R) >droSec1.super_29 43582 99 + 700605 UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAACACGAAUCGCUCUGCACUCUGCCAAAAAAUUCCC--------------------- ............(((((((((((.(((((((((((((((((.......))))))))......))))))...)))..))))).)).))))..........--------------------- ( -24.50, z-score = -1.71, R) >droYak2.chr3L_random 1059066 99 + 4797643 UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAACACGAAUCGCUCUGCACUCUGCCAAAAAAUUCCC--------------------- ............(((((((((((.(((((((((((((((((.......))))))))......))))))...)))..))))).)).))))..........--------------------- ( -24.50, z-score = -1.71, R) >droEre2.scaffold_4784 19155399 99 + 25762168 UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAACACGAAUCGCUCUGCACUCUGCCAAAAAAUUCCC--------------------- ............(((((((((((.(((((((((((((((((.......))))))))......))))))...)))..))))).)).))))..........--------------------- ( -24.50, z-score = -1.71, R) >droAna3.scaffold_13337 5175848 120 - 23293914 UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAACACGAAGCGUUCUGCACUCUGCCAAAAAAAAAAAAGAAGAAGGAAAGGUGGCCCA ............(((((((((((.((.((((((((((((((.......))))))))......))))))....))..))))).)).))))......................((....)). ( -25.40, z-score = 0.66, R) >droWil1.scaffold_180727 632714 86 + 2741493 UUUGUGCACGUCUGGCGAAGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUCUAGAGUAAAUACGAAAUUCACUGCAUUCUG---------------------------------- ...(((((((.(((......))).)).((((((((((((((.......)))))))......))))))).........)))))....---------------------------------- ( -17.10, z-score = 0.01, R) >dp4.chrXR_group8 7428666 94 + 9212921 UUUGCGCACGUCUGGCAGUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAAUACGAAAUGCUCUGCAUACUGCCAAAAAA-------------------------- ((((.(((.((...((((.(((.(((..(((((((((((((.......))))))))..)))))....)))..))).))))..)))))))))...-------------------------- ( -27.10, z-score = -2.41, R) >droPer1.super_48 218496 94 + 581423 UUUGCGCACGUCUGGCAGUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAAUACGAAAUGCUCUGCAUACUGCCAAAAAA-------------------------- ((((.(((.((...((((.(((.(((..(((((((((((((.......))))))))..)))))....)))..))).))))..)))))))))...-------------------------- ( -27.10, z-score = -2.41, R) >droGri2.scaffold_15110 23601023 93 + 24565398 UUUGUGCACGUCUGGCGAUGCACUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGCUUAAAGCAAAUACAAG----UUUGCACAGUGCCAAAUUU-GUU---------------------- ((((.(((((..((((((.....((((((.....))))))......))))))..).....((((((....)----)))))...))))))))...-...---------------------- ( -24.60, z-score = -1.39, R) >droMoj3.scaffold_6680 10291554 94 - 24764193 UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUUAGGCAAAUACAAA----UUUGCACUGUGCCAAAUUUCGUU---------------------- ((((.((((...((((((...((((((((.....))))))))....))))))......((((((((....)----))))).)))))))))).......---------------------- ( -24.30, z-score = -1.57, R) >droVir3.scaffold_13049 12928871 93 + 25233164 UUUGUGCACGUCUGGCGAUGCACUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUUAAGCAAAUACAAA----UUUGCACUGUGCCAAAUUU-GUU---------------------- ...(((((((.....)).))))).....(((((((((((((.......)))))))..))))))...(((((----(((((.....).)))))))-)).---------------------- ( -22.90, z-score = -1.37, R) >consensus UUUGUGCACGUCUGGCGAUGCAGUCGAGUGUUUAAUUUGAUUAAUUUUGUCAAGUUUAAAGCAAACACGAAUCGCUCUGCACUCUGCCAAAAAA_UCC______________________ ...(((((((.(((......))).)).((((((((((((((.......))))))))......)))))).........)))))...................................... (-17.90 = -17.97 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:32 2011