| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,333,070 – 19,333,162 |
| Length | 92 |
| Max. P | 0.912445 |
| Location | 19,333,070 – 19,333,162 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 76.38 |
| Shannon entropy | 0.44999 |
| G+C content | 0.58753 |
| Mean single sequence MFE | -28.82 |
| Consensus MFE | -19.21 |
| Energy contribution | -19.97 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.912445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19333070 92 + 24543557 UAGCCACAACCCGAUCCCACGGCCAAUCCGAGUUCCGACCGGUGAGAACACACGCCUGGAGCUACCGGCUUGGCUUGGCUUUA-ACAGCAUCU .(((((.....((......))(((((.((((((((((..(((((....))).))..)))))))..))).))))).)))))...-......... ( -30.50, z-score = -2.14, R) >droEre2.scaffold_4784 19145988 87 + 25762168 UACCAAAAACCCGAUCCCACGGCCAAUCCGAGUUCCGACCGGUGAGAAUACACGCCUGGAGCUGCCGGCUUGGCUU-----UA-ACAGCAUCU ....................((((((.((((((((((...((((........)))))))))))..))).)))))).-----..-......... ( -24.30, z-score = -1.25, R) >droYak2.chr3L_random 1049444 87 + 4797643 UACCAAAAACCCGAUCCCACGGCCAAUCCGAGUUCCGACCGGUGAGAACACACGCCUGGAGCUGCCGGCUUGGCUU-----UA-ACAGCCUCU ....................((((((.((((((((((..(((((....))).))..)))))))..))).)))))).-----..-......... ( -25.30, z-score = -1.44, R) >droSec1.super_29 34251 92 + 700605 UAGCCACAACGCGAUCCCACGGCCAAUCCGAGUUCCGACCGGUGAGAACACACGCCUGGAGCUGCCGGCUUGGCUUGGCUUUA-ACAGCAUCU .(((((...((.(....).))(((((.((((((((((..(((((....))).))..)))))))..))).))))).)))))...-......... ( -31.30, z-score = -1.43, R) >droSim1.chr3L 18657936 92 + 22553184 UAGCCACAACCCGAUCCCACGGCCAAUCCGAGCUCCGACCGGUGAGAACACACGCCUGGAGCUGCCGGCUUGGCUUGGCUUUA-ACAGCAUCU .(((((.....((......))(((((.((((((((((..(((((....))).))..)))))))..))).))))).)))))...-......... ( -32.90, z-score = -2.27, R) >droMoj3.scaffold_6680 10279852 79 - 24764193 ---------CUGGGU---AUGGCCAAAAGGAAUGCGGGGCAUCAAUAGU-CGUACCUGUGGCUAUCG-CUCGGCCCGGGUUUAUGCGCCAUGC ---------....((---(((((((....((((.((((.(..(.(((((-((......))))))).)-...).)))).)))).)).))))))) ( -28.60, z-score = -0.54, R) >consensus UAGCCACAACCCGAUCCCACGGCCAAUCCGAGUUCCGACCGGUGAGAACACACGCCUGGAGCUGCCGGCUUGGCUUGGCUUUA_ACAGCAUCU ....................((((((.((((((((((..(((((....))).))..)))))))..))).)))))).................. (-19.21 = -19.97 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:31 2011