| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,709,732 – 5,709,823 |
| Length | 91 |
| Max. P | 0.738747 |
| Location | 5,709,732 – 5,709,823 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 73.20 |
| Shannon entropy | 0.49562 |
| G+C content | 0.37192 |
| Mean single sequence MFE | -20.64 |
| Consensus MFE | -12.15 |
| Energy contribution | -12.37 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.738747 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 5709732 91 - 23011544 ------CUUGCGUGUUUCAUUAAUAAUGCAUU-----------UAAGUGCAGUGGAAAAACACGAAGGUGA-GCGUCGAACAUAAAUUAGGAACCAUAAUCACGCAUAC ------..((((((............(((((.-----------...)))))((((.....(((....))).-..(.....)............))))...))))))... ( -20.20, z-score = -1.36, R) >droSim1.chr2L 5503068 91 - 22036055 ------CUUGCGUGUUUCAUUAAUAAUGCAUU-----------UAAGUGCAGUGGAAAAACACGAAGGUGA-GCGUCGAACAUAAAUUAGGAACCAUAAUCACGCAUAC ------..((((((............(((((.-----------...)))))((((.....(((....))).-..(.....)............))))...))))))... ( -20.20, z-score = -1.36, R) >droSec1.super_5 3788589 91 - 5866729 ------CUUGCGUGUUUCAUUAAAAAUGCAUU-----------UAAGUGCAGUGGAAAAACACGAAGGUGA-GCGUCGAACAUAAAUUAGGAACCAUAAUUACGCAUAC ------..((((((((((........(((((.-----------...)))))((.((....(((....))).-...))..))........))))).......)))))... ( -18.91, z-score = -1.10, R) >droYak2.chr2L 8842355 91 + 22324452 ------CUCGCGUGUUUCAUUAAUAAUGCAUU-----------UAAGUGCAGUGGCAAAACACGAAGGUGA-GCGUCGAAAAUAAAUUAAGCACCAUAAUCACGCAUAU ------...(((((............(((((.-----------...)))))((((.....(((....))).-((................)).))))...))))).... ( -21.29, z-score = -1.58, R) >droEre2.scaffold_4929 5800252 91 - 26641161 ------CUUGCGUGUUUCAUUAAUAAUGCAUU-----------UAAGUGCAGUGGAAAAACACGAAGGUGA-GCGUCGAACAUAAAUUAAGGACCAUUAUCACGCAUAC ------..((((((..(((((.....(((((.-----------...)))))(((......)))...)))))-(.(((..............)))).....))))))... ( -19.94, z-score = -1.17, R) >droAna3.scaffold_12916 11152402 96 - 16180835 CGGAAGAUCGCGUGUUGCAUUAAGUAUGCAUU-----------AAAAUGCAAUGGGAUAGCACGAAAGUG--GCGUCUAAUAUGAAUUACGGUGUUAUGUCACGCAUAU (....)...(((((..((((...((((((((.-----------...)))))...((((..(((....)))--..)))).........))).)))).....))))).... ( -25.30, z-score = -1.12, R) >droWil1.scaffold_180708 4064132 103 + 12563649 ------GUUGCGUGUUGCAUUAAAUAUGCAUUAAAAAUACUUAAAAAUGCAAUGAAAUAACAAGCAAACAAGUCGUCCAAUAUGAGUUAUGCUACAAUAGCACGCAUAC ------..(((((((((.........((((((.............))))))...........((((...((.((((.....)))).)).))))....)))))))))... ( -21.12, z-score = -1.18, R) >droVir3.scaffold_12963 3736641 101 - 20206255 --------UGCGUGUUGCAUUAAACAUACAUUAAAUAUACUCAAAAAUGCAUUGAAAUCCGGAGUAAGCAGCGUUUCAGAAAUGAAUUACUAAACAUUGUCACGCAUAC --------((((((((((.((((.......))))...(((((....((........))...))))).)))))..((((....))))...............)))))... ( -18.20, z-score = -0.64, R) >consensus ______CUUGCGUGUUUCAUUAAUAAUGCAUU___________UAAGUGCAGUGGAAAAACACGAAGGUGA_GCGUCGAACAUAAAUUAGGAACCAUAAUCACGCAUAC .........(((((............((((((.............)))))).........(((....)))..............................))))).... (-12.15 = -12.37 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:42 2011