| Sequence ID | dm3.chr2LHet |
|---|---|
| Location | 311,360 – 311,412 |
| Length | 52 |
| Max. P | 0.998114 |
| Location | 311,360 – 311,412 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 53.38 |
| Shannon entropy | 0.86487 |
| G+C content | 0.52116 |
| Mean single sequence MFE | -11.50 |
| Consensus MFE | -6.75 |
| Energy contribution | -5.95 |
| Covariance contribution | -0.80 |
| Combinations/Pair | 2.20 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.26 |
| SVM RNA-class probability | 0.998114 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2LHet 311360 52 + 368872 CCCUCAAGAUUUAGGCCGUCCUCGGCCGACCCUAUUUUGGCCAGUACUUCCU---- ...(((((((...(((((....)))))......)))))))............---- ( -13.10, z-score = -1.48, R) >droSim1.chr2R 19473018 52 - 19596830 CCUUCAAGAUGUAGUCCGCCCUCGGCCGCCCUGAUCUGAGCAAUCACCACAU---- ......((((.(((..((((...)).))..)))))))((....)).......---- ( -7.40, z-score = 0.37, R) >droAna3.scaffold_13258 677340 52 + 1584923 CUCUUAAAUUGGACGCCGUCCUCGGUGAAAGCCAAUUCGUCCAUGGACCUUU---- ......((((((.(((((....)))))....)))))).(((....)))....---- ( -14.50, z-score = -1.98, R) >droWil1.scaffold_176513 1406 52 - 3213 CCCUUAAGUUUGUUGCCGUCCUCGGUGACACUUAGUUCAUUUACCACAGCCU---- ...((((((..((..(((....)))..)))))))).................---- ( -11.70, z-score = -2.52, R) >droVir3.scaffold_12967 526756 51 + 817856 -CUUUUAAUUUAAGGCCGCCCUCGGCCGUUCCUAUCUCGGCGAUCACCUUCU---- -............(((((....)))))...........((......))....---- ( -9.70, z-score = -0.45, R) >droMoj3.scaffold_6500 1065470 56 - 32352404 UCACUAGCUUGAAGAUCGUCCUCGGUUUUCCCCAAAGUGUCGAUGACAGCUCGUAU ..((.(((..((((((((....)))))))).......((((...))))))).)).. ( -12.60, z-score = -1.23, R) >consensus CCCUUAAGUUGAAGGCCGUCCUCGGCCGACCCUAUUUCGGCCAUCACCGCCU____ .............(((((....)))))............................. ( -6.75 = -5.95 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:04:50 2011