| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,314,555 – 19,314,618 |
| Length | 63 |
| Max. P | 0.578090 |
| Location | 19,314,555 – 19,314,618 |
|---|---|
| Length | 63 |
| Sequences | 3 |
| Columns | 63 |
| Reading direction | reverse |
| Mean pairwise identity | 93.65 |
| Shannon entropy | 0.08746 |
| G+C content | 0.37566 |
| Mean single sequence MFE | -12.51 |
| Consensus MFE | -12.38 |
| Energy contribution | -12.27 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.578090 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19314555 63 - 24543557 AUUCCAGCCUUUUUGUUGGGGCUGGCCAAAAAAUAUAAUUACAAUUACGAGCAACAUUAUAGG ...((((((((......))))))))...................................... ( -12.70, z-score = -0.98, R) >droEre2.scaffold_4784 19127011 63 - 25762168 AUUCCAGCCUUUUUGUUGGGGCUGGCAAAAAAAUAUAAUUACAACUACGAGCAAGGUUAUAGG ...((((((((......)))))))).............(((.((((........)))).))). ( -13.60, z-score = -1.05, R) >droYak2.chr3L 2959808 63 + 24197627 AUUCCAGUCUUUUUGUUGGGGCUGGCCAAAAGAUAUAAUUACAACUACGAGCAAGAUUAUAGG ...((((((((......))))))))........(((((((..............))))))).. ( -11.24, z-score = -0.41, R) >consensus AUUCCAGCCUUUUUGUUGGGGCUGGCCAAAAAAUAUAAUUACAACUACGAGCAAGAUUAUAGG ...((((((((......))))))))........(((((((..............))))))).. (-12.38 = -12.27 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:28 2011