Locus 7996

Sequence ID dm3.chr3L
Location 19,302,270 – 19,302,386
Length 116
Max. P 0.576225
window11005

overview

Window 5

Location 19,302,270 – 19,302,386
Length 116
Sequences 3
Columns 116
Reading direction reverse
Mean pairwise identity 77.87
Shannon entropy 0.30657
G+C content 0.38316
Mean single sequence MFE -21.63
Consensus MFE -17.75
Energy contribution -18.87
Covariance contribution 1.12
Combinations/Pair 1.11
Mean z-score -1.10
Structure conservation index 0.82
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.17
SVM RNA-class probability 0.576225
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 19302270 116 - 24543557
UUAAUCGAAAUGAUCCCUACUGUUUUAUAGUUUGCCUUUCUGAGAAGGCAUUCUGUGACUAAAAUUCCUCCGUGUGAGCACAGUGUUUGAUGCUUUCUGUGUAACUUCAAUCCGGU
........................((((((..(((((((....)))))))..))))))...........(((..(((((((((.((.....))...))))))....)))...))). ( -26.50, z-score =  -1.83, R)
>droSim1.chr3L 18617317 116 - 22553184
UUAAUCGAAAUGAUCCCUGCUGUUUUAUAUCUUGCCUUUCUAAAAAGGCAUUAUGUGACUAAAAUUCGUCCGUGUGAGCACAGUGUUUGAUGCUUUCUGUGUAACUUCAAUCCGGU
........................((((((..(((((((....)))))))..))))))...........(((..(((((((((.((.....))...))))))....)))...))). ( -23.70, z-score =  -1.57, R)
>droSec1.super_19 1256615 91 - 1257711
------------------------UUA-AUCGAAAUGAUCUAAAAAGGCAUUAUGUGACUAAAAUUCCUCCGUGUGAGCACAGUGUUUGAUGCUUUCUGUGUAACUUCAAUCCGGU
------------------------(((-.(((.((((.(((....)))))))...))).))).......(((..(((((((((.((.....))...))))))....)))...))). ( -14.70, z-score =   0.11, R)
>consensus
UUAAUCGAAAUGAUCCCU_CUGUUUUAUAUCUUGCCUUUCUAAAAAGGCAUUAUGUGACUAAAAUUCCUCCGUGUGAGCACAGUGUUUGAUGCUUUCUGUGUAACUUCAAUCCGGU
........................((((((..(((((((....)))))))..))))))...........(((..(((((((((.((.....))...))))))....)))...))). (-17.75 = -18.87 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:26 2011