| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,278,617 – 19,278,708 |
| Length | 91 |
| Max. P | 0.847489 |
| Location | 19,278,617 – 19,278,708 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 69.81 |
| Shannon entropy | 0.55083 |
| G+C content | 0.36232 |
| Mean single sequence MFE | -16.69 |
| Consensus MFE | -11.16 |
| Energy contribution | -11.31 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.22 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847489 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19278617 91 - 24543557 AAAGCAUAUAUGUAUACUGCAUAUGACAUUUUCCCAGCUGUUUUAAAAUGCCAACGGGAAUAUGGGUACGACAAGCGGAAAGGGAAAGUGA ......(((((((.....))))))).(((((((((..((((((.....((((............))))....))))))...))))))))). ( -24.60, z-score = -2.46, R) >droSim1.chr3L 18587991 79 - 22553184 AAAGCAUAUAUAC-UGCA---GAUGAUAUUUUCCCAGCUGUUUUAAAAUGCCAC--------UGGGUACGACAAGCGGAAAGGGAAAGUGA ...(((.......-))).---.....(((((((((..((((((.....((((..--------..))))....))))))...))))))))). ( -20.80, z-score = -2.14, R) >droSec1.super_19 1232306 89 - 1257711 AAAGCAUAUAUAC-CGCA-GCGAUGAUAUUUUCCCAGCUGUUUUAAAAUGCCACCAGGAAUAUGGGAACGACAAGCGGAAAGGGAAAGUGA ...((........-.)).-.......(((((((((..((((((..........(((......))).......))))))...))))))))). ( -18.03, z-score = -0.37, R) >droYak2.chr3L 2916893 86 + 24197627 AAAGCAUAUAUAC-UGCAAAUGAUGAUAUUUUCCCAGCUGUUUUAAAAUGCCACCGGGAACAUGGGUA----AAGCGAAAAGGGAAAGUGA ...(((.......-))).........(((((((((...(((((((..(((((....))..)))...))----)))))....))))))))). ( -18.40, z-score = -0.76, R) >droPer1.super_48 156463 78 - 581423 AAAAAUGAUAUGGAAAUCUAUA----UAUUUUGCCAGCUGUUUUCAAAUCCAA----AAACAUUGAA-----GAAAGGAAAGAGAAAGUGA .((((((.(((((....)))))----))))))....(((.(((((...(((..----..........-----....)))..)))))))).. ( -9.49, z-score = 0.07, R) >dp4.chrXR_group8 7366351 82 - 9212921 AAAAAUGAUAUGGAAAUCUAUAUAUGUAUUUUGCCAGCUGUUUUCAAAUCCAA----AAACAUUGAA-----GAAAGGAAAGAGAAAGUGA .((((((((((((....))))))...))))))....(((.(((((...(((..----..........-----....)))..)))))))).. ( -8.79, z-score = 0.62, R) >consensus AAAGCAUAUAUAC_UACA_AUGAUGAUAUUUUCCCAGCUGUUUUAAAAUGCCAC___GAACAUGGGAA____AAGCGGAAAGGGAAAGUGA ..........................(((((((((..((((((.......(((.........))).......))))))...))))))))). (-11.16 = -11.31 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:23 2011