| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,236,243 – 19,236,342 |
| Length | 99 |
| Max. P | 0.529201 |
| Location | 19,236,243 – 19,236,342 |
|---|---|
| Length | 99 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 74.18 |
| Shannon entropy | 0.34482 |
| G+C content | 0.31244 |
| Mean single sequence MFE | -18.43 |
| Consensus MFE | -14.43 |
| Energy contribution | -14.77 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529201 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19236243 99 - 24543557 AUUCCUCUAUUCUGAGGAAUUAUUACUUUUUAUUUUUACUUUUCUUUUUCCAACAUGAAUAUGAUUAUAGGACUUUAAUA---AGAUCUACAGGUCGAAAUA----- .((((((......))))))((((((..((((((..(((...(((............)))..)))..))))))...)))))---)((((....))))......----- ( -15.70, z-score = -1.12, R) >droSec1.super_19 1190132 92 - 1257711 AUACCUCUAUUCUGAGGAAUUAAUA---------------AAUCUUUUUCCACCAUGAAUGUGAUUAUAGGGUUAUAAUAAGUAGAUCUGUAGGUCGAAAUAAGAGC ...((((......))))........---------------..((((((((.(((((....))...(((((..((((.....))))..)))))))).)))).)))).. ( -16.60, z-score = -0.16, R) >droSim1.chr3L 18543551 92 - 22553184 AUUCCUCUAUUCUGAGGAAUAAGUA---------------ACUCUUUUUCCACCAUGAAUGUGAUUACAGGGCUACUAUAAGUAGAUCUGUAGGUCGAAAUAACAGC (((((((......))))))).....---------------......((((.(((((....))...(((((..((((.....))))..)))))))).))))....... ( -23.00, z-score = -1.83, R) >consensus AUUCCUCUAUUCUGAGGAAUUAAUA_______________AAUCUUUUUCCACCAUGAAUGUGAUUAUAGGGCUAUAAUAAGUAGAUCUGUAGGUCGAAAUAA_AGC (((((((......)))))))........................(((..((..(((....)))..(((((..((((.....))))..)))))))..)))........ (-14.43 = -14.77 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:22 2011