| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,231,115 – 19,231,205 |
| Length | 90 |
| Max. P | 0.642848 |
| Location | 19,231,115 – 19,231,205 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 79.27 |
| Shannon entropy | 0.33532 |
| G+C content | 0.53049 |
| Mean single sequence MFE | -32.78 |
| Consensus MFE | -20.23 |
| Energy contribution | -21.90 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642848 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19231115 90 + 24543557 ---------------AAAUGUAGCUCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCAGAAGGGGGUUAGUCCUCGUGAGGGG-AGGGGGCCAGAAGCA----------- ---------------.......((((((((......................(((((((..(((....))).)))))))(((....))))-)))))))........----------- ( -31.00, z-score = -1.64, R) >droSim1.chr3L 18538621 90 + 22553184 ---------------AAUUGUGGCUCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCAGAAGGGGGUUAGUCCUCGAGAGGGG-AGGGGGCCAGAAGCA----------- ---------------..((.((((((((((......................(((((((..(((....))).)))))))(((....))))-))))))))).))...----------- ( -36.30, z-score = -2.95, R) >droSec1.super_19 1185013 90 + 1257711 ---------------AAUUGUGGCUCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCAGAAGGGGGUUAGUCCUCGUGAGGGG-AGGGGGCCAGAAGCA----------- ---------------..((.((((((((((......................(((((((..(((....))).)))))))(((....))))-))))))))).))...----------- ( -37.30, z-score = -3.11, R) >droYak2.chr3L 2866572 88 - 24197627 ---------------AAAUGUGGCUCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCA-AAGGGGGUUACUUCUCGAGAGGGG-AGGGGGUCGGGAGC------------ ---------------...(((((((......))).))))..........(((((((...(((((.-....))))).((((((....))))-))..)))))))...------------ ( -29.20, z-score = -1.66, R) >droEre2.scaffold_4784 19041533 88 + 25762168 ---------------AAAUGCGGCUCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCA-AAGGGGGUAAGUUCUCGAGAGGGG-AGGGGGCUAGGAGC------------ ---------------......(((((((((...(((..............(((.....)))(((.-...))))))....(((....))))-))))))))......------------ ( -25.10, z-score = -0.47, R) >droAna3.scaffold_13337 5067294 116 - 23293914 UUUCUCUCAAUCUCUCAGAAGGACUCUCGCAAGUACACAAAAACAAAAGCCUGGCUAACUGCCCA-AAGGGGGUAAGUCUGCGAGAGGGCCAAGAGAUGGGUGGCAGGGGGCAACCA ..((.((((.(((((.....((.((((((((.((........))........((((.(((.((..-..)).))).))))))))))))..)).))))))))).))....((....)). ( -37.80, z-score = -0.82, R) >consensus _______________AAAUGUGGCUCUCUCAAGUACACAAAAACAAAAGCCUGGCUAACAGCCCA_AAGGGGGUUAGUCCUCGAGAGGGG_AGGGGGCCAGAAGCA___________ ..................(.(((((((((.......................(((((((..(((....))).)))))))(((....)))..))))))))).)............... (-20.23 = -21.90 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:21 2011