| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,694,429 – 5,694,523 |
| Length | 94 |
| Max. P | 0.731392 |
| Location | 5,694,429 – 5,694,523 |
|---|---|
| Length | 94 |
| Sequences | 12 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 68.83 |
| Shannon entropy | 0.64554 |
| G+C content | 0.54140 |
| Mean single sequence MFE | -35.26 |
| Consensus MFE | -11.58 |
| Energy contribution | -10.45 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.71 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5694429 94 + 23011544 --UGGGUCGGCUUGUCAGGAGCAGGAA-UGACAAAUGCUUGUUAGACAGGCAGACCGGGAAAGCCUGUA---GUGGAGCCUCC---GACAGGACUUCCUUCCA--------- --..((((.(((((((...((((((.(-(.....)).)))))).))))))).))))(((((..(((((.---..((.....))---.)))))..)))))....--------- ( -38.60, z-score = -2.38, R) >droSim1.chr2L 5487800 94 + 22036055 --UGGGUCGGCUUGUCAGGAGCAGGAA-UGACAAAUGCUCGUUAGACAGGCAGACCGGGAAAGCCUGUA---GUGGAGCCUCC---GACAGGACUUCCUUCCA--------- --..((((.((((((((.(((((....-.......))))).)..))))))).))))(((((..(((((.---..((.....))---.)))))..)))))....--------- ( -39.40, z-score = -2.50, R) >droSec1.super_5 3773384 94 + 5866729 --UGGGUCGGCUUGUCAGGAGCAGGAA-UGACAAAUGCUCGUUAGACAGGCAGACCGGGAAAGCCUGUA---GUGGAGCCUCC---GACAGGACUUCCUUCCA--------- --..((((.((((((((.(((((....-.......))))).)..))))))).))))(((((..(((((.---..((.....))---.)))))..)))))....--------- ( -39.40, z-score = -2.50, R) >droYak2.chr2L 8826771 94 - 22324452 --UGGGUCGGCUUGUCAGGAGCAGAAA-UGACAAAUGCUCGUUAGACAGGCAGACCGGGAAAGCCUGUA---GGAAAGCCUCC---GCCAGGACUUCCUUCCA--------- --..((((.((((((((.(((((....-.......))))).)..))))))).))))(((((..((((..---(((.....)))---..))))..)))))....--------- ( -40.10, z-score = -3.11, R) >droEre2.scaffold_4929 5784431 94 + 26641161 --UGGGUCGGCUUGUCAGGAGCAGAAA-UGACAAAUGCUCGUUAGACAGGCAGACCGGGAAAGCCUGUA---GGAAAGCCUCC---GCCAGGACUUCCUUGCA--------- --..((((.((((((((.(((((....-.......))))).)..))))))).))))(((((..((((..---(((.....)))---..))))..)))))....--------- ( -40.10, z-score = -3.06, R) >droAna3.scaffold_12916 11134984 98 + 16180835 --UGGGCCGGCAUGUCGGUGGCAGAAA-UGACAAAUGUUUGUUAGGCAGGCAGAACCGGAAGGCCUAGA---AGAAAGCUUCC---AAUAAGGCUUCAUCCGCCUCC----- --.((((.(((...(((((.((.....-((((((....)))))).....))...)))))...)))..((---.(((.((((..---....))))))).)).))))..----- ( -30.40, z-score = -0.40, R) >dp4.chr4_group4 3102624 98 + 6586962 GGGGGGUCGGCUUGUCAGUGGCAGAAAAUGACAAAUGUUCGUUAGACAGGCAGACCGGGAAAGCCUGUA---AGAGAGCUCCUCCUGACAGGAUUUCCUGG----------- ....((((.(((((((..((((.(((.((.....)).)))))))))))))).))))((((((.(((((.---((.(((...))))).))))).))))))..----------- ( -37.20, z-score = -2.02, R) >droPer1.super_10 2121159 98 + 3432795 GGGGGGUCGGCUUGUCAGUGGCAGAAAAUGACAAAUGUUCGUUAGACAGGCAGACCGGGAAAGCCUGUA---AGAGAGCUCCUCCUGACAGGAUUUCCUGG----------- ....((((.(((((((..((((.(((.((.....)).)))))))))))))).))))((((((.(((((.---((.(((...))))).))))).))))))..----------- ( -37.20, z-score = -2.02, R) >droWil1.scaffold_180708 8527391 84 + 12563649 -UAGCUCUGGCUUGUCAGUGGCAGGAA-UGACAAAUGUUCGUUAGACAGGCAGGCCGGCAAAGGCUGUA---ACAUGGCUGAC----AGAAGA------------------- -(((((.(((((((((..((((..(((-(.......))))))))))))))).((((......))))...---.)).)))))..----......------------------- ( -24.50, z-score = -0.38, R) >droVir3.scaffold_12963 3708043 88 + 20206255 --UGGCUCGGCUUGUCAGUGGCAG-AAAUGACAAAUGUUCGCCAGACAGGCAG-CCGGAAAAUUGUGUG----GAAAGCCCUUAACU----GGCCCUACC------------ --.((((..(((((((..((((.(-((((.....)).))))))))))))))))-))..........(((----(...(((.......----))).)))).------------ ( -26.40, z-score = -0.31, R) >droMoj3.scaffold_6500 14147274 109 + 32352404 --UGGCUUGGCUUGUCAGUGCCGGCAAAUGACAAAUGUUCGCUAGACAGGCAG-CCGGAAAAUUGUGUGUGUGAAUAGCCAAACAGCCGUAGAGUGGGCCAGUCGGGGUUGG --....(((((((((((.((....))..)))))).(((((((...(((.((((-........)))).))))))))))))))).(((((...((.((...)).))..))))). ( -31.90, z-score = 0.83, R) >droGri2.scaffold_15252 3225092 100 + 17193109 --UAGCUCCGCUUGUCAGUGGUGA-AUAUGACAAAUGUUCACCAGACAGGCAG-CCGGAAAAUUGUGUG----GAAAGCCUGCCAGCAUAAGGGCAUGCCCAAACCCA---- --..(((..(((((((..((((((-((((.....)))))))))))))))))))-).((....(((((((----(........))).)))))(((....)))....)).---- ( -37.90, z-score = -3.06, R) >consensus __UGGGUCGGCUUGUCAGUGGCAGAAA_UGACAAAUGUUCGUUAGACAGGCAGACCGGGAAAGCCUGUA___GGAAAGCCUCC___GACAGGACUUCCUUCCA_________ ....((((.(((((((...((((............)))).....))))))).....((....................))...........))))................. (-11.58 = -10.45 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:41 2011