| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,212,687 – 19,212,778 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 19,212,687 – 19,212,778 |
|---|---|
| Length | 91 |
| Sequences | 9 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 80.39 |
| Shannon entropy | 0.39948 |
| G+C content | 0.33945 |
| Mean single sequence MFE | -19.64 |
| Consensus MFE | -11.82 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 19212687 91 + 24543557 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACUGUUUUAUAUAUGUAUCUAUACUAUGGGCAUGUA---- .((.....))........((((((.(((...(((......)))..(((((((.(((........))).)))))))......))))))))).---- ( -21.10, z-score = -1.24, R) >droSim1.chr3L 18519476 91 + 22553184 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACUGUUUUAUAUAUCUAUCUAUACUGCGAGCAUGUA---- .((....((((((......))))))......(((......)))))...((((.((..(((..((((........))))..))).)).))))---- ( -16.20, z-score = 0.54, R) >droSec1.super_19 1166666 91 + 1257711 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACUGUUUUAUAUAUCUAUCUAUACUGCGAGCAUGUA---- .((....((((((......))))))......(((......)))))...((((.((..(((..((((........))))..))).)).))))---- ( -16.20, z-score = 0.54, R) >droYak2.chr3L 2844513 95 - 24197627 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACAAUUUGAUAUAUCUAUCUAUACUAUAUAUGUACGUGUA .((....((((((......))))))......(((......)))))...((((.(((((((.((.((((......)))).)).)).))))).)))) ( -19.10, z-score = -0.83, R) >droEre2.scaffold_4784 19023305 91 + 25762168 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACAAUUUGAUAUAUCUAUCUAUACUAUAUACGCGUA---- .((....((((((......))))))(((((......)))))((..((((((((((...)))))...)))))..))...........))...---- ( -16.90, z-score = -0.86, R) >dp4.chrXR_group8 7301784 84 + 9212921 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACGAAUUUAUAUGUAUUUGUA-AAUAUGUG---------- .((....((((((......))))))......(((......)))))...((((((((((........))))))))))-........---------- ( -20.60, z-score = -2.52, R) >droPer1.super_48 91340 84 + 581423 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACGAAUUUAUAUGUAUUUGUA-AAUAUGUG---------- .((....((((((......))))))......(((......)))))...((((((((((........))))))))))-........---------- ( -20.60, z-score = -2.52, R) >droWil1.scaffold_180949 3351949 90 - 6375548 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUAUAUAUAAAAAGAGAGAGAAAUAUAUAUA-UAUGUAUGUGUG---- .......((((((......))))))......(((......)))(((.(((((((((....................))-))))))).))).---- ( -17.55, z-score = -1.95, R) >droMoj3.scaffold_6680 11221980 90 - 24764193 AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAAGCAAGCAUAUAUAUAAGUAUGUGUGUGUGGGUACA-CAUAUACAUAUA---- .((....((((((......))))))(((((......)))))..))..............(((((((((((((....))-))))))))))).---- ( -28.50, z-score = -3.55, R) >consensus AGCAAUUUGCGUGGGUAAACAUGCACUAAAACUCAAUUUAGAGGCGGAUACAAGUACAAUUUUAUAUAUCUAUCUAUACUAUGUGCAUGUA____ .((....((((((......))))))......(((......))))).................................................. (-11.82 = -11.93 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:18 2011