| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,211,470 – 19,211,578 |
| Length | 108 |
| Max. P | 0.988122 |
| Location | 19,211,470 – 19,211,578 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 76.56 |
| Shannon entropy | 0.39092 |
| G+C content | 0.31785 |
| Mean single sequence MFE | -22.52 |
| Consensus MFE | -19.92 |
| Energy contribution | -18.96 |
| Covariance contribution | -0.96 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988122 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19211470 108 + 24543557 GAAUGCAAUGCACAUAGCUGAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGUAUUGUAUUUAUCUAUAAAUUCAAUUAAAAGUAGUUGGAUUG------- ((((((((((((((...((((.....))))((.(((((....))))).))............)))))))))))))).......((((((((((....)))))))))).------- ( -29.30, z-score = -3.72, R) >droEre2.scaffold_4784 19022125 96 + 25762168 AAAUACGAUGCACAUAGCUGAAAUGCUCAGAAAGUGGGUCACUCUAUAUUGUUAUUUUAAAGGGUGCAUUGUACUUAACAACAAAUACAAUUAGGU------------------- ...((((((((((....((((.....))))...(((((....)))))................)))))))))).......................------------------- ( -18.50, z-score = -0.84, R) >droYak2.chr3L 2843239 114 - 24197627 AAAAGCGAUGCACAUAGCUAACAUGCUCAGAAAGUAGGUCACUCUAUAUUGUUAUUUCAAAGGGUGCAUAAUUCUUAAAAAUAAAUACAAU-AGGUAGCGUGGAUAGAUCUGAUG ....(((..((.....)).....)))(((((.......((((.((((((((((((((..((((((.....))))))..)))))...)))))-..)))).)))).....))))).. ( -20.00, z-score = 0.13, R) >droSec1.super_19 1165560 97 + 1257711 AAAUGCGAUGCAUAUAGCUCAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGCAUUGUAUUUACCUAUAAAUUGAAUUAAAAG------------------ ((((((((((((((.(((......)))...((.(((((....))))).))............)))))))))))))).....................------------------ ( -21.30, z-score = -2.19, R) >droSim1.chr3L 18518334 97 + 22553184 AAAUGCAAUGCACAUAGCUCAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGCAUUGUAUUUAACUAUAAAUUGAAUUAAAAG------------------ ((((((((((((((.(((......)))...((.(((((....))))).))............)))))))))))))).....................------------------ ( -23.50, z-score = -3.22, R) >consensus AAAUGCGAUGCACAUAGCUCAAAUGCUCAGGAAGUAGGUCACUCUAUAUCGUUAUUUUAAACUGUGCAUUGUAUUUAACUAUAAAUUCAAUUAAAAG__________________ (((((((((((((..(((......)))...((.(((((....))))).)).............)))))))))))))....................................... (-19.92 = -18.96 + -0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:17 2011