| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,182,151 – 19,182,249 |
| Length | 98 |
| Max. P | 0.669622 |
| Location | 19,182,151 – 19,182,249 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 76.09 |
| Shannon entropy | 0.46667 |
| G+C content | 0.46421 |
| Mean single sequence MFE | -27.96 |
| Consensus MFE | -16.83 |
| Energy contribution | -18.14 |
| Covariance contribution | 1.31 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.669622 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19182151 98 - 24543557 GCUAAGAAAAAUCUGGGAGCGGGAAGAAAAGCGAAAAGCUGAGUCUCGAUUGGAGUUGGGCUUGGUGGCUUUUUAACGCCAUUUUGUGGCUACCCUGU (((.(((....)))...)))(((..(((((((.(.(((((.((.(((.....))))).)))))..).)))))))...(((((...)))))..)))... ( -32.90, z-score = -2.04, R) >droSim1.chr3L 18489137 98 - 22553184 GCUAAGAAAAAUCUGGGAGCGGGAAGGAAAGCGGAAAGCUGAGUCUCGAUUGGAGUUGGGCUUGGUGGCUUUUUAACGCCAUUUUGUGGCUACCCUGU (((.(((....)))...)))(((..(((((((.(.(((((.((.(((.....))))).)))))..).)))))))...(((((...)))))..)))... ( -32.50, z-score = -1.43, R) >droSec1.super_19 1137695 98 - 1257711 GCUAAGAAAAAUCUGGGAGCGGGAAGGAAAGCAAAAAGCUGAGUCUCGAAUGGAGUUGGGCUUGGUGGCUUUUUAACGCCAUUUUGUGGCUACCCUGU (((.(((....)))...)))(((..(((((((...(((((.((.(((.....))))).)))))....)))))))...(((((...)))))..)))... ( -32.20, z-score = -1.75, R) >droYak2.chr3L 2793954 97 + 24197627 GCUAA-AAAAAUCUGGGAACGGGAAGGAAAGCGAAAAGCCGAGUCUCAAUUGGAGCUGGGCUUGGUGGCUUUUUAACGCCAUUUUGUGGAUACCCUGU .....-............(((((..(((((((.(.(((((.((.(((.....))))).)))))..).)))))))....((((...))))....))))) ( -28.90, z-score = -1.03, R) >droEre2.scaffold_4784 18994211 98 - 25762168 GCUAAGAAAAAUCUGGGAACGGGAAGGAAAGCGAAAAGCUGGGACUCGAUUGGAGCUGGGCUUGGUGGCUUUUUAACGCCAUUUUGUGGCUACCCUGU .((.(((....))).)).(((((..(((((((.(.(((((.((.(((.....))))).)))))..).)))))))...(((((...)))))...))))) ( -31.80, z-score = -1.71, R) >droAna3.scaffold_13337 5022599 86 + 23293914 -----------GCAAAGGAAGGAAAAGAAAGC-AAAAGCUAAACCUUGAAUAGAGUUGGGUUUGGUGGCUUUUAAACGCCAUUUUGUGGGUACCCUGU -----------((((((...((....((((((-....(((((((((...........))))))))).)))))).....)).))))))((....))... ( -23.50, z-score = -1.30, R) >droVir3.scaffold_13049 13759853 78 - 25233164 -----------GCAGACAAAAAAUAUACAAACAAAUAGCAAGA-----AGCAGAGCUG---CUGUUGGAUUUUU-ACGCCAUUUUGUUGCCGCUCUGU -----------................................-----.(((((((.(---(...(((......-...))).......)).))))))) ( -13.90, z-score = 0.74, R) >consensus GCUAAGAAAAAUCUGGGAACGGGAAGGAAAGCGAAAAGCUGAGUCUCGAUUGGAGUUGGGCUUGGUGGCUUUUUAACGCCAUUUUGUGGCUACCCUGU ..................(((((..(((((((...(((((.((.(((.....))))).)))))....)))))))...(((((...)))))...))))) (-16.83 = -18.14 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:16 2011