| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,176,103 – 19,176,207 |
| Length | 104 |
| Max. P | 0.858092 |
| Location | 19,176,103 – 19,176,207 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 84.70 |
| Shannon entropy | 0.29711 |
| G+C content | 0.47119 |
| Mean single sequence MFE | -29.78 |
| Consensus MFE | -21.07 |
| Energy contribution | -22.48 |
| Covariance contribution | 1.42 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858092 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19176103 104 + 24543557 AGAAUCGGGUGGUUGGGGCCUAAGUGGAUACCGGCAACGGAACACGAAGUCCAAUAAACGUUUUGCGGUAAAUGCGAAAUUAAUAAUUAAGCAGCCAGCAGUGC .......(.((((((((((....(((....(((....)))..)))...)))).......((((((((.....))))))))...........)))))).)..... ( -30.90, z-score = -1.89, R) >dp4.chrXR_group8 7262565 88 + 9212921 --AAUUGGGUAGGGGAUUCACGGGCCGGGGCCGGUGGGGGGGCA----GACCAAUAAACGUUUUGCGGUAAAUGCGAAAUUAAUAAUUAAGCAG---------- --.(((((........(((((.(((....))).)))))......----..)))))....((((((((.....))))))))..............---------- ( -23.99, z-score = -1.60, R) >droSim1.chr3L 18483107 104 + 22553184 AGAAUCGGGUGGUUGGGGCCUAAGUGGAUACUGGCAACGGAACACGAAGUCCAAUAAACGUUUUGCGGUAAAUGCGAAAUUAAUAAUUAAGCAGCCAGCACUGC .......(.((((((((((....(((....(((....)))..)))...)))).......((((((((.....))))))))...........)))))).)..... ( -28.70, z-score = -1.39, R) >droSec1.super_19 1131639 103 + 1257711 -GAAUCGGGUGGUUGGGGCCUAAGUGGAUACCGGCAACGGAACACGAAGUCCAAUAAACGUUUUGCGGUAAAUGCGAAAUUAAUAAUUAAGCAGCCAGCACUGC -......(.((((((((((....(((....(((....)))..)))...)))).......((((((((.....))))))))...........)))))).)..... ( -30.90, z-score = -1.87, R) >droYak2.chr3L 2787742 104 - 24197627 UGAAUUGGGUGGUUGGGGCCUAAGUGGAUACCGGCAACGGAACACGAAGUCCAAUAAACGUUUUGCGGUAAAUGCGAAAUUAAUAAUUAAGCAGCCACAACUGC ........(((((((((((....(((....(((....)))..)))...)))).......((((((((.....))))))))...........)))))))...... ( -32.10, z-score = -2.45, R) >droEre2.scaffold_4784 18988048 101 + 25762168 ---AUUGGGUGGUUGGGGCCUAAGUGGAUACCGGCAACGGAACACGAAGUCCAAUAAACGUUUUGCGGUAAAUGCGAAAUUAAUAAUUAAGCAGCCACAACUGG ---.....(((((((((((....(((....(((....)))..)))...)))).......((((((((.....))))))))...........)))))))...... ( -32.10, z-score = -2.57, R) >consensus _GAAUCGGGUGGUUGGGGCCUAAGUGGAUACCGGCAACGGAACACGAAGUCCAAUAAACGUUUUGCGGUAAAUGCGAAAUUAAUAAUUAAGCAGCCAGCACUGC .........((((((((((....(((....(((....)))..)))...)))).......((((((((.....))))))))...........))))))....... (-21.07 = -22.48 + 1.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:15 2011