| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,170,398 – 19,170,489 |
| Length | 91 |
| Max. P | 0.500000 |
| Location | 19,170,398 – 19,170,489 |
|---|---|
| Length | 91 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.94 |
| Shannon entropy | 0.30818 |
| G+C content | 0.39669 |
| Mean single sequence MFE | -23.54 |
| Consensus MFE | -14.87 |
| Energy contribution | -15.32 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 19170398 91 - 24543557 ------------GGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCUGAGCGCAAUCCUUUUUACAUCCUU----------------- ------------.(((((.((((.....))))))))).((((((..(((((..((((((......))))))))).))..))))))..................----------------- ( -21.80, z-score = -1.77, R) >droSim1.chr3L 18477359 91 - 22553184 ------------GGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCUGAGCGCAAUCCUUUUUACAUCCUU----------------- ------------.(((((.((((.....))))))))).((((((..(((((..((((((......))))))))).))..))))))..................----------------- ( -21.80, z-score = -1.77, R) >droSec1.super_19 1125998 91 - 1257711 ------------GGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCUGAGCGCAAUCCUUUUUACAUCCUU----------------- ------------.(((((.((((.....))))))))).((((((..(((((..((((((......))))))))).))..))))))..................----------------- ( -21.80, z-score = -1.77, R) >droYak2.chr3L 2781967 91 + 24197627 ------------GGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCUGAGCGCAAUCCUUUUUACAUCCUU----------------- ------------.(((((.((((.....))))))))).((((((..(((((..((((((......))))))))).))..))))))..................----------------- ( -21.80, z-score = -1.77, R) >droEre2.scaffold_4784 18982364 91 - 25762168 ------------GGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCUGAGCGCAAUCCUUUUUACAUCCUU----------------- ------------.(((((.((((.....))))))))).((((((..(((((..((((((......))))))))).))..))))))..................----------------- ( -21.80, z-score = -1.77, R) >droAna3.scaffold_13337 5011355 91 + 23293914 ------------GGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCAGAGCGCAAUCCUUUUUACAUCCUU----------------- ------------.(((((.((((.....))))))))).(((((((.(((((..((((((......))))))))).)).)))))))..................----------------- ( -22.50, z-score = -1.87, R) >dp4.chrXR_group8 7256458 102 - 9212921 -ACCAUUCCAGGGCCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCGAGGCGCAAUCCUUUUUACAUCCUU----------------- -........((((((((((((((.....))))))).))))(((((.(((((..((((((......))))))))).)).))))).....)))............----------------- ( -25.30, z-score = -1.55, R) >droPer1.super_48 44292 102 - 581423 -ACCAUUCCAGGGCCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCGAGGCGCAAUCCUUUUUACAUCCUU----------------- -........((((((((((((((.....))))))).))))(((((.(((((..((((((......))))))))).)).))))).....)))............----------------- ( -25.30, z-score = -1.55, R) >droWil1.scaffold_180949 3288657 103 + 6375548 UCCGGCUCCAUCUCCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCGAAGCGCAAUCCUUUUUACAUCCUU----------------- ...((.........(((((((((.....))))))).))(((((((.(((((..((((((......))))))))).)).)))))))...)).............----------------- ( -22.90, z-score = -2.08, R) >droVir3.scaffold_13049 13747615 113 - 25233164 -----UUCCUCUGGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCA--GCCCAAUCCUUUUUACAUCCUGUGAGCUCAACGUUCACU -----.....(((((((((((((.....)))))))(((((((....)))).(((((.....))))).....))))))))--)....................((((((.....)))))). ( -29.00, z-score = -3.17, R) >droMoj3.scaffold_6680 11168491 113 + 24764193 -----UUGCUUUGGCCAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCU--GCACAAUCCUUUUUACAUCCUGCGAGCUCAACGCUCACU -----.(((...(((.(((((((.....)))))))(((((((....)))).(((((.....))))).....))).))).--)))....................((((.....))))... ( -25.90, z-score = -1.34, R) >droGri2.scaffold_15110 9079116 113 + 24565398 -----UGCCUGUGGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCU--GCACAAUCCUUUUUACAUCCUGUGAGCUCAACACAAACU -----....((((((((((((((.....)))))))..(((((....))(((..((((((......))))))))).))))--)).........(((((.....))))).....)))).... ( -22.60, z-score = -0.21, R) >consensus ____________GGCAAAGUCAAUUCCUUUGAUUUGUGGCGCUUUUGCGUGCAAUUUUUUAAAUUGAAAAUCACUGCCUGAGCGCAAUCCUUUUUACAUCCUU_________________ ............(.(((((((((.....))))))).)).)((((..(((((..((((((......))))))))).))..))))..................................... (-14.87 = -15.32 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:14 2011