| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,166,554 – 19,166,644 |
| Length | 90 |
| Max. P | 0.718828 |
| Location | 19,166,554 – 19,166,644 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 90 |
| Reading direction | forward |
| Mean pairwise identity | 79.96 |
| Shannon entropy | 0.37193 |
| G+C content | 0.55068 |
| Mean single sequence MFE | -19.73 |
| Consensus MFE | -17.23 |
| Energy contribution | -17.48 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.21 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19166554 90 + 24543557 UAUCUGUAUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCGGACCCCCCUCUCACCAUCCCCGAUCCCCAUCAUUU ..((((...(..((((((.((((...((....))))))...))))))..)...))))................................. ( -20.20, z-score = -0.60, R) >droSim1.chr3L 18473569 90 + 22553184 UAUCUGUAUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCGGACCCUCCUCCCAUCCUCCCCGCUCCCCCUCAUUU ..((((...(..((((((.((((...((....))))))...))))))..)...))))................................. ( -20.20, z-score = -1.18, R) >droSec1.super_19 1122241 90 + 1257711 UAUCUGUAUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCUUGGGUGGUACCGGACCCUCCUCCCAUCCUCCCCGCUCCCCCUCAUUU ..((((...(..((((((.((((...((....))))))...))))))..)...))))................................. ( -17.50, z-score = -0.19, R) >droYak2.chr3L 2778146 83 - 24197627 UAUUUGUAUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCAGGCCCGCCUUCCCUGAUCCCC---CUCCAUU---- .....(((((.(((((((.((((...((....))))))...))))))))))))((((.........))))......---.......---- ( -21.40, z-score = -1.34, R) >droEre2.scaffold_4784 18978400 84 + 25762168 UAUCUGUAUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCAGGCCCCCCCUCCCCGAUUCCC---CUCCAUUU--- ..((((...(..((((((.((((...((....))))))...))))))..)...))))...................---........--- ( -20.00, z-score = -1.16, R) >droPer1.super_48 39327 84 + 581423 UAUCUGUGA--GCCCAGGCAUCAGUCCGUCAUCGUGAUUUUCCUGGGUGGUACCUCUCCACCUCCUCCUUCUCGUUGCAUGCCUUU---- ....((..(--(((((((....((((((....)).))))..)))))))(((........)))............)..)).......---- ( -19.10, z-score = -0.77, R) >consensus UAUCUGUAUCUGCCCAGGCAUCAGUUCGUCAUCGUGAUUUUCCUGGGUGGUACCGGACCCCCCUCCCAUCAUCCCCGCUCCCCAUCA___ ..((((...(((((((((.((((...((....))))))...)))))))))...))))................................. (-17.23 = -17.48 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:13 2011