| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,140,165 – 19,140,234 |
| Length | 69 |
| Max. P | 0.624676 |
| Location | 19,140,165 – 19,140,234 |
|---|---|
| Length | 69 |
| Sequences | 5 |
| Columns | 73 |
| Reading direction | forward |
| Mean pairwise identity | 91.23 |
| Shannon entropy | 0.15110 |
| G+C content | 0.53939 |
| Mean single sequence MFE | -7.68 |
| Consensus MFE | -7.20 |
| Energy contribution | -7.20 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624676 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19140165 69 + 24543557 GAUCCCCCACUCCUG----UCCUCCUCCGCUCAUAUAGAGUGUCAACCCUUCCGCCAAUAUUUGCUGACGCUU ..............(----((......(((((.....)))))...........((........)).))).... ( -7.80, z-score = -1.11, R) >droEre2.scaffold_4784 18952320 69 + 25762168 GAUGCCCCACUCCUU----CCCUCCUCCACUCAUAUAGAGUGUCAACCCUUCCGCCAAUAUUUGCUGACGCUU ...((..........----........(((((.....)))))........((.((........)).)).)).. ( -7.50, z-score = -1.38, R) >droYak2.chr3L 2748565 68 - 24197627 GAUCCCCCACUCCU-----UCCCUACCCGCUCAUAUAGAGUGUCAACCCUUCCGCCAAUAUUUGCUGACGCUU ..............-----..................((((((((........((........)))))))))) ( -7.20, z-score = -1.53, R) >droSec1.super_19 1095996 73 + 1257711 GAUCCCCCACUCCUGCCUGUCCUCCUCCGCUCAUACAGAGUGUCAACCCUUCCGCCAAUAUUUGCUGACGCUU ............(((..((..(......)..))..)))(((((((........((........))))))))). ( -8.00, z-score = -0.58, R) >droSim1.chr3L 18447288 73 + 22553184 GAUCCCCCACUCCUGCCUGUCCUCCUCCGCUCAUAUAGAGUGUCAACCCUUCCGCCAAUAUUUGCUGACGCUU ..............((..(((......(((((.....)))))...........((........)).))))).. ( -7.90, z-score = -0.70, R) >consensus GAUCCCCCACUCCUG____UCCUCCUCCGCUCAUAUAGAGUGUCAACCCUUCCGCCAAUAUUUGCUGACGCUU .....................................((((((((........((........)))))))))) ( -7.20 = -7.20 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:12 2011