| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,680,296 – 5,680,424 |
| Length | 128 |
| Max. P | 0.970284 |
| Location | 5,680,296 – 5,680,424 |
|---|---|
| Length | 128 |
| Sequences | 5 |
| Columns | 135 |
| Reading direction | forward |
| Mean pairwise identity | 82.24 |
| Shannon entropy | 0.32152 |
| G+C content | 0.42648 |
| Mean single sequence MFE | -37.07 |
| Consensus MFE | -23.80 |
| Energy contribution | -24.08 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970284 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5680296 128 + 23011544 -------AAGUCGCGUCGACAGAAGUCGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUAGAUUCAAUUAAUUAAAGGUGAUAAUUGGGUAGCUAAUUGGAAACAAGAUUUUCACUUACAAAGAAAUAAG -------.(((((((.((((....))))...))))))).((((((((..(((((.....)))))...)))))))).....((((((.((((..((..((....))..))..)))).))))))............. ( -36.00, z-score = -2.71, R) >droYak2.chr2L 8812138 135 - 22324452 AAGUCGCGUCCAAAAGAGGUCGAGAAUGCAGUGAGAUUGUGAUUGGACGACCGCAGGCGGCGGUAGAUUCAAUUAAUUAAAGGUGAUAAUUGGGCACCUAAUUGGCAACAAGAUUUUCACGUAAAAAGCACUAAA .(((.(((.((......)).).....(((.((((((...((((((((..(((((.....)))))...)))))))).....(((((.........)))))..(((....)))...)))))))))....)))))... ( -34.70, z-score = -1.27, R) >droEre2.scaffold_4929 5770305 134 + 26641161 AAGUCGCCUC-GAAAGAGGUCGAGACUGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUUAUUGGGUAGCUAAUUGGCAACAAGAUUUUCACCUAAAAAGAACUAAG .(((((((((-....)))))...))))..(((.(.....(((((((((.(((((.....))))).).)))))))).....((((((..(((..((.(((....))).))..)))..)))))).....).)))... ( -46.30, z-score = -4.08, R) >droSec1.super_5 3759109 134 + 5866729 AAGUCGCGUC-GGCAGAGGUCGAGACUGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUAAUUGGUUAGCUAAUUGGAAACAAGAUUUUCACUUAAAAAGAACUAAG .(((((((.(-.((((.........)))).)))))))).(((((((((.(((((.....))))).).)))))))).....((((((.((((((....))..(((....))))))).))))))............. ( -39.00, z-score = -2.30, R) >droSim1.chr2L 5473714 112 + 22036055 ----------------------AAGUCGC-GUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUAAUUGGUUAGCUAAUUGGAAACAAGAUUUUAACUUAAAAAGAACUAAG ----------------------.(((((.-...))))).(((((((((.(((((.....))))).).))))))))......(((.......((((((....(((....)))....))))))........)))... ( -29.36, z-score = -2.56, R) >consensus AAGUCGCGUC_GAAAGAGGUCGAGACUGCAGUGCGAUUGUGAUUGGACGACCGCAGGCGGCGGUGGAUUCAAUUAAUUAAAGGUGAUAAUUGGGUAGCUAAUUGGAAACAAGAUUUUCACUUAAAAAGAACUAAG .......................................(((((((((.(((((.....))))).).)))))))).....((((((...((((....))))(((....))).....))))))............. (-23.80 = -24.08 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:40 2011