| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,088,148 – 19,088,219 |
| Length | 71 |
| Max. P | 0.881826 |
| Location | 19,088,148 – 19,088,219 |
|---|---|
| Length | 71 |
| Sequences | 7 |
| Columns | 82 |
| Reading direction | reverse |
| Mean pairwise identity | 74.86 |
| Shannon entropy | 0.45945 |
| G+C content | 0.52468 |
| Mean single sequence MFE | -23.20 |
| Consensus MFE | -12.52 |
| Energy contribution | -14.40 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881826 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19088148 71 - 24543557 CGGCCACGAAUUGGGGUCGACAAUUAAAAGUUGACUGCCCUCAAUGA--GGUGGCCAGUCAUAACCCCCAGCC--------- .((((((..((((((((.(.((((.....)))).).)))).))))..--.)))))).................--------- ( -24.60, z-score = -2.13, R) >droSim1.chr3L 18401514 71 - 22553184 CGGCCACGAAUUGGGGUCGACAAUUAAAAGUUGACUGCCCUCAAUGA--GGUGGCCAGUCAUAACCCCCAGCC--------- .((((((..((((((((.(.((((.....)))).).)))).))))..--.)))))).................--------- ( -24.60, z-score = -2.13, R) >droSec1.super_19 1051160 71 - 1257711 CGGCCACGAAUUGGGGUCGACAAUUAAAAGUUGACUGCCCUCAAUGA--GGUGGCCAGUCAUAACCCCCAGCC--------- .((((((..((((((((.(.((((.....)))).).)))).))))..--.)))))).................--------- ( -24.60, z-score = -2.13, R) >droYak2.chr3L 2704010 71 + 24197627 CGGCCAGGAAUUGGGGUCGACAAUUAAAAGUUGACUGCCCUCAAUGA--GGUGGCCAGCCAUUGCCCCCAGGC--------- .(((((......(.(((((((........))))))).)((((...))--))))))).......(((....)))--------- ( -24.40, z-score = -0.63, R) >droEre2.scaffold_4784 18906788 71 - 25762168 CGGCCACGAAUUGGGGUCGACAAUUAAAAGUUGACUGCCCUCAAUGA--GGUGGCCAGCCAUAGCCCCCAGCC--------- .((((((..((((((((.(.((((.....)))).).)))).))))..--.)))))).................--------- ( -24.60, z-score = -1.68, R) >droAna3.scaffold_13337 4936353 67 + 23293914 ----CCCGAAUCGGGGUCGACAAUUAAAAGUUGACUGCCCGAAAUGA--GGUGGUUGGACAUUACCUCCAACC--------- ----((((..(((((((((((........))))))..)))))..)).--)).(((((((.......)))))))--------- ( -24.50, z-score = -2.87, R) >droWil1.scaffold_180949 3173937 80 + 6375548 --UUACUCGAUUGGGGUCAACAAUUAAUAAAUAAUUAAGCCAAAUAGUUGUAGAUUAGAUGGAGGCAAAAACUCGCUCCACC --.........((((((...((.(((((..(((((((.......)))))))..))))).))(((.......))))))))).. ( -15.10, z-score = -1.17, R) >consensus CGGCCACGAAUUGGGGUCGACAAUUAAAAGUUGACUGCCCUCAAUGA__GGUGGCCAGUCAUAACCCCCAGCC_________ .((((((..((((((((((((........))))))....)))))).....)))))).......................... (-12.52 = -14.40 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:06 2011