| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,071,507 – 19,071,627 |
| Length | 120 |
| Max. P | 0.739568 |
| Location | 19,071,507 – 19,071,627 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.48 |
| Shannon entropy | 0.35117 |
| G+C content | 0.43075 |
| Mean single sequence MFE | -23.65 |
| Consensus MFE | -15.31 |
| Energy contribution | -15.88 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19071507 120 + 24543557 UCUAACAAGUAAAAGUCGAAUAAGGAAAACCAGAAGGAAACACUUGUCGACUGGAAAAGAUUAAAGAUUUCUGCUGCAUCUAACGGCAGAGAAGGAAAAACCCACCGACCCGCCGACUAA .......(((...((((((.((((.....((....)).....))))))))))((.............(((((((((.......))))))))).((......)).)).........))).. ( -26.70, z-score = -1.85, R) >droSim1.chr3L 18384745 105 + 22553184 UCUAACAAGUAAAAGUCCAAUAAGGAAAACCAGAAGGAAACACUUGUCGACUGGAAAAGA-------UUUCUGCUGCAACUAACGGCAGAGAAGGAAAGCCCCACCGACUAA-------- ......((((.....(((.....))).........(....)))))((((..(((......-------(((((((((.......))))))))).((....))))).))))...-------- ( -24.00, z-score = -1.79, R) >droYak2.chr3L 2674058 105 - 24197627 ACCAACAAGUAAAAGUCCAAUAAGAAAAGCCAGAAGGAAACAGUCGUUGAGUGGAAAAGA-------UUUCUGGUGCAGCUAACGGCAGAAAAGGAAACCGACACCGACUAU-------- ........((.....(((.................(....).(((((((..((.(..((.-------...))..).))..)))))))......))).....)).........-------- ( -18.80, z-score = -0.29, R) >droEre2.scaffold_4784 18890380 93 + 25762168 UCUAACAAGUAAAAGUCCAUAAAGGAAAACCAGAAGGAG------------UGGAAAAGA-------UUUCUGCUGCAGCUAGCGGCAGAGAAGGAAAACCCCACCGACUAU-------- .............((((......((....)).....(.(------------(((......-------((((((((((.....)))))))))).((....)))))))))))..-------- ( -25.10, z-score = -2.89, R) >consensus UCUAACAAGUAAAAGUCCAAUAAGGAAAACCAGAAGGAAACACUUGUCGACUGGAAAAGA_______UUUCUGCUGCAGCUAACGGCAGAGAAGGAAAACCCCACCGACUAU________ .............((((............((....))...............((.............(((((((((.......))))))))).((......)).)))))).......... (-15.31 = -15.88 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:01 2011