| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,069,216 – 19,069,326 |
| Length | 110 |
| Max. P | 0.624933 |
| Location | 19,069,216 – 19,069,326 |
|---|---|
| Length | 110 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 80.61 |
| Shannon entropy | 0.36856 |
| G+C content | 0.43525 |
| Mean single sequence MFE | -28.72 |
| Consensus MFE | -14.59 |
| Energy contribution | -16.08 |
| Covariance contribution | 1.49 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.624933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19069216 110 - 24543557 UAACUAGCUUAUUUAACUACCCACUCAGUCAGUGAGCCCGUAUUGAAUGAGUGGCCAACUGAUUAAGUGAGCAACUGAUGCGGUGACUAAGCUCAGUCUUUUAUGUCGAC ......(((((((((((...(((((((.((((((......)))))).)))))))......).)))))))))).(((((.(((....)...)))))))............. ( -31.90, z-score = -2.33, R) >droSim1.chr3L 18382461 110 - 22553184 UAACUAGCUUAUUUAACUACCCACUCAGUCAGUGAGUCCGUAUUGAACGAGUGGCCAACUGAUUAAGUGAGCAACUGAUGCGGUGACUAAGCUCAGUCUUUUAUGUCGAC ......(((((((((((...((((((..((((((......))))))..))))))......).)))))))))).(((((.(((....)...)))))))............. ( -30.40, z-score = -1.62, R) >droSec1.super_19 1032921 110 - 1257711 UAACUAGCUUAUUUAACUACCCACUCGGUCAGUGAGUCCGUAUUGAAUGAGUGGCCAACUGAUUAAGUGAGCAACUGAUGCGGUGACUAAGCUCAGUCUUUUAUGUCGAC ......(((((((((((...(((((((.((((((......)))))).)))))))......).)))))))))).(((((.(((....)...)))))))............. ( -31.20, z-score = -1.76, R) >droYak2.chr3L 2671728 110 + 24197627 UAACUAGCUUAUUUAACUAUCCACUCAGUGAGUGAGUCCGUAUUGAAUGAGUGACCAACUGAUUAAAUGAGCAACUGAUGCGGUGACUAAGCUUGGUCUUUUAUGUCGAC ......((((((((((.(((..(((((.....)))))..)))))))))))))((((((((..........(((.....)))(....)..)).))))))............ ( -25.10, z-score = -0.88, R) >droEre2.scaffold_4784 18887973 98 - 25762168 UAACUAGCUUAUUUAACUAUCCACUC-------GAGU-CGUAUUGAAUGAGUGACCAACUGAUUAAGUGAGCAACUGAUGCGGUGACUAAGCUCAGUGU----UGUUGAC ((((..(((((((((((....(((((-------(..(-(.....)).)))))).......).)))))))))).(((((.(((....)...)))))))..----.)))).. ( -23.40, z-score = -1.04, R) >droAna3.scaffold_13337 4920198 87 + 23293914 UAACUAGCUUAGUUAACUAUUCGCAC------UGAAUGGGCGCU-AGUGACUCGCUAACUGAUUAGCCCAGCCACUGAUGCCCUGACUAAGCCC---------------- ......(((((((((...((((....------.))))(((((.(-((((.((.(((((....)))))..)).))))).))))))))))))))..---------------- ( -30.30, z-score = -4.49, R) >consensus UAACUAGCUUAUUUAACUACCCACUCAGUCAGUGAGUCCGUAUUGAAUGAGUGGCCAACUGAUUAAGUGAGCAACUGAUGCGGUGACUAAGCUCAGUCUUUUAUGUCGAC ..(((((((((.(((.......(((((.....)))))(((((((.....(((.((..(((.....)))..)).))))))))))))).)))))).)))............. (-14.59 = -16.08 + 1.49)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:00 2011