| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,068,014 – 19,068,119 |
| Length | 105 |
| Max. P | 0.714205 |
| Location | 19,068,014 – 19,068,119 |
|---|---|
| Length | 105 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 82.24 |
| Shannon entropy | 0.29803 |
| G+C content | 0.41572 |
| Mean single sequence MFE | -19.86 |
| Consensus MFE | -12.76 |
| Energy contribution | -12.48 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.714205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19068014 105 + 24543557 ------------AAACUUCAU-AUCCACUACAUGCCUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUUGACGUAACUGCCAAAACGG-CUAUAAAAAAUCCUACAGAAAUA ------------....(((..-..............(((.(((.(((.((.((((........)))).)))))..))).)))...(((.....))-)................)))... ( -20.10, z-score = -2.10, R) >droSim1.chr3L 18381316 105 + 22553184 ------------AAAAUUGCA-AUCCACUAUAUGCUUGCUUCACUGUAUCUGGCCAUUCAACCGGCCCGAACACUUGACGUAACUGCCAAAACAG-CUAUAAAAAAUCCUACAGAAAUA ------------......(((-(.(........).))))....(((((((.((((........)))).)).........(((.(((......)))-.))).........)))))..... ( -17.10, z-score = -1.51, R) >droSec1.super_19 1031762 105 + 1257711 ------------AAAAUUUCA-AUCCACCAUAUGCAUGCUUCACUGUAUCUGGCCAUUCAACCGACCCGAACACUUGACGUAACUGCCAAAACGG-CUAUAAAAAAUCCUACAGAAAUA ------------...(((((.-.....(((.(((((........))))).)))................................(((.....))-)................))))). ( -12.90, z-score = -0.51, R) >droYak2.chr3L 2670585 119 - 24197627 UAAGCAUUUACUAUAUUUACAUAUACACUAUAUGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUAGACGUAACUGCCAAACGGCAUUAAAAAAAAUCAUACACAAAUA .((((((....(((((....)))))......))))))((.((..(((.((.((((........)))).)))))...)).))...((((....))))....................... ( -22.90, z-score = -2.55, R) >droEre2.scaffold_4784 18886755 106 + 25762168 -----------GAAACUUCCA-CUUCACUAUACGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUAGAAGUAACUGCCAAACGGC-UUUAAAAAAAUCGGACAGAAAUA -----------....(((((.-.............(((((((..(((.((.((((........)))).)))))...)))))))..(((....)))-............))).))..... ( -26.30, z-score = -3.19, R) >consensus ____________AAAAUUCCA_AUCCACUAUAUGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUUGACGUAACUGCCAAAACGG_CUAUAAAAAAUCCUACAGAAAUA .................................((.(((.((..(((.((.((((........)))).)))))...)).)))...))................................ (-12.76 = -12.48 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:37:00 2011