| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,066,410 – 19,066,479 |
| Length | 69 |
| Max. P | 0.519786 |
| Location | 19,066,410 – 19,066,479 |
|---|---|
| Length | 69 |
| Sequences | 6 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 67.89 |
| Shannon entropy | 0.57769 |
| G+C content | 0.46378 |
| Mean single sequence MFE | -15.97 |
| Consensus MFE | -9.17 |
| Energy contribution | -8.95 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519786 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19066410 69 + 24543557 GAAAUCAAUAUUACGCAUACGCAGUGUGUGCGGCGGUGGGUAAACGACGUUGUUUACUCGCACCCAGGU ..............((((((.....))))))((..(((((((((((....)))))))))))..)).... ( -24.60, z-score = -2.05, R) >droEre2.scaffold_4784 18885110 66 + 25762168 CAAAUCGAUAUUACGCAUACGCAGUGUGUGCGGCGGUGGGUAAACG---UUGUUUACUCGCACCCAGGU ..............((((((.....))))))((..((((((((((.---..))))))))))..)).... ( -22.80, z-score = -1.70, R) >droYak2.chr3L 2668868 66 - 24197627 GAAAUUGAUAUUACGCAUACGCAGUGUGUGCGGCGGUUGGUAAACG---UUGUUUACUCGCACCCAGGU ..............((((((.....))))))((..((.(((((((.---..))))))).))..)).... ( -18.20, z-score = -0.25, R) >droSim1.chr3L 18379766 52 + 22553184 GAAAUCGAUAUUACGCAUACGCAGUGUGUGCG-----------------UUGUUUACUCGCACCCAGAU .....(((.((.((((((((.....)))))))-----------------).))....)))......... ( -11.20, z-score = -0.43, R) >droVir3.scaffold_13049 13360286 57 + 25233164 -GAAUAUGUAUUACGCAUACGCCAUGUGUGUGGCCAUG-----------UUAUUUUUUUGUGCUCCGUC -.((((((.....(((((((.....)))))))..))))-----------)).................. ( -10.60, z-score = 0.03, R) >droMoj3.scaffold_6680 10770502 56 - 24764193 GAAUUUAAUAUUACGCAUACGCCAUGUGUGUGGCCAUG-----------UCUAUAACAUACAACAGC-- .............(((((((.....)))))))...(((-----------(.....))))........-- ( -8.40, z-score = 0.71, R) >consensus GAAAUCGAUAUUACGCAUACGCAGUGUGUGCGGCGGUG___________UUGUUUACUCGCACCCAGGU .............(((((((.....)))))))..................................... ( -9.17 = -8.95 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:59 2011