| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,053,125 – 19,053,220 |
| Length | 95 |
| Max. P | 0.961528 |
| Location | 19,053,125 – 19,053,220 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 97.89 |
| Shannon entropy | 0.02900 |
| G+C content | 0.32982 |
| Mean single sequence MFE | -16.40 |
| Consensus MFE | -16.37 |
| Energy contribution | -16.37 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.86 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961528 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19053125 95 - 24543557 GAAAAUAAUCAUUGGUCAAUCUAUUACUAGUUUCAACUAGAUCUCUUAAAGAUCCAUUAAAGUUGCACAGUUGCCAACUAUAAUGCCCUCGAUUG ................(((((.....(((((....)))))..........((..(((((.(((((((....)).))))).)))))...))))))) ( -16.10, z-score = -1.86, R) >droSim1.chr3L 18365901 95 - 22553184 GAAAAUAAUCAUUGGACAAUCUAUUACUAGUUUCAACUAGAUCUCUUAAAGAUCCAUUAAAGUUGCACAGUUGCCAACUAUAAUGACCUCGAUUG ................(((((.....(((((....)))))..............(((((.(((((((....)).))))).))))).....))))) ( -16.60, z-score = -1.87, R) >droSec1.super_19 1017407 95 - 1257711 GAAAAUAAUCAUUGGACAAUCUAUUACUAGUUUCAACUAGAUCUCUUAAAGAUUCAUUAAAGUUGCACAGUUGCCAACUAUAAUGCCCUCGAUUG ................(((((.....(((((....)))))..........((..(((((.(((((((....)).))))).)))))...))))))) ( -16.50, z-score = -1.85, R) >consensus GAAAAUAAUCAUUGGACAAUCUAUUACUAGUUUCAACUAGAUCUCUUAAAGAUCCAUUAAAGUUGCACAGUUGCCAACUAUAAUGCCCUCGAUUG ................(((((.....(((((....)))))..........((..(((((.(((((((....)).))))).)))))...))))))) (-16.37 = -16.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:58 2011