| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,673,966 – 5,674,067 |
| Length | 101 |
| Max. P | 0.596407 |
| Location | 5,673,966 – 5,674,067 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 72.91 |
| Shannon entropy | 0.46610 |
| G+C content | 0.51218 |
| Mean single sequence MFE | -33.22 |
| Consensus MFE | -18.90 |
| Energy contribution | -19.43 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596407 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5673966 101 - 23011544 AUUGAUUAAUUGCUGGUCGGCUGGCCGCCUUUUGGUUGCAGAAUGAGUGGAUGAACUGAAGCGGCGACUCGCCGUCUGCUCGCAAUUAAU----AAAGGGGUGAC ....(((((((((.(((((((.((.(((((((..(((.((...........)))))..))).)))).)).))))...))).)))))))))----........... ( -32.50, z-score = -1.12, R) >droSim1.chr2L 5467370 97 - 22036055 AUUGAUUAAUUGCUCGCCGGCUGGCCGCCUUUUGGUUGCA----GAGUGGGUGAACUGAAGCGACGACUCGCCGGCGGCUUGCAAUUAAU----AAAGAGGCGAU ....(((((((((((((((((..((.(((....))).)).----((((.(.((........)).).))))))))))))...)))))))))----........... ( -37.00, z-score = -1.93, R) >droSec1.super_5 3752848 97 - 5866729 AUUGAUUAAUUGCUCGUCGGCUGGCUGCCUUUUGGUUGCA----GAGUGGGUGAACUGAAGCGCCGACUCGACGGCGCCUUGCAAUUAAU----AAAGAGGCGAA ....(((((((((.(((((....((.(((....))).)).----((((.((((........)))).))))..)))))....)))))))))----........... ( -34.40, z-score = -1.60, R) >droYak2.chr2L 8805865 97 + 22324452 AUUGAUUAAUUGCUCGUCGGCUCGCCGCCUUUUGGCUGCA----GAGUGGGUGAACUGAAGCGGCGACUCGCCAGCGGCCUGCAAUUAAU----AAAGGGGCGAA ....(((((((((((..(.((((((.(((....))).)).----)))).)..))......((((((...)))).)).....)))))))))----........... ( -34.10, z-score = -0.13, R) >dp4.chr4_group4 3450839 100 + 6586962 AUUGAUUAAUUGUCUGUUGGCUGACAUUUUUUGGUCGGCA----CUGAAGGUCCACAGAAGU-CCGGGCCGCCGGCAGGCGUCAAUUAAUUCGAAAAAAAGUGGC .((((((((((((((((((((((((........)))))).----.....(((((........-..)))))..))))))))...)))))).))))........... ( -30.50, z-score = -1.19, R) >droPer1.super_10 1279100 100 + 3432795 AUUGAUUAAUUGUCUGUUGGCUGACAUUUUUUGGUCGGCA----CUGAAAGUCCACAGAAGU-CCGGGCCGCCGGCAGGCGUCAAUUAAUUCGAAAAAAAGUGGC .((((((((((((((((((((.(((........)))(((.----(((.(..((....))..)-.))))))))))))))))...)))))).))))........... ( -30.80, z-score = -1.52, R) >consensus AUUGAUUAAUUGCUCGUCGGCUGGCCGCCUUUUGGCUGCA____GAGUGGGUGAACUGAAGCGCCGACUCGCCGGCGGCCUGCAAUUAAU____AAAGAGGCGAC ....(((((((((((((((((..((.(((....))).))......(((......))).............))))))))...)))))))))............... (-18.90 = -19.43 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:39 2011