| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,045,114 – 19,045,234 |
| Length | 120 |
| Max. P | 0.713419 |
| Location | 19,045,114 – 19,045,234 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 83.67 |
| Shannon entropy | 0.29429 |
| G+C content | 0.35839 |
| Mean single sequence MFE | -27.40 |
| Consensus MFE | -20.67 |
| Energy contribution | -20.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.713419 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19045114 120 - 24543557 CUAAUUUCCAUUCGUUUUUGCGUAUUAUCCAAUAUCUUAAGGGUCAUUCCCCUUGUGUGUAUAUAUAGGAACAAAGUUAGUUUAAGAAGCUCAUUGGGGCUGUGGAAAAUGGGCAACCAU ....(((((((..(((((((..(((......((((..((((((......)))))).)))))))..)))))))...............(((((....))))))))))))((((....)))) ( -30.40, z-score = -1.41, R) >droSim1.chr3L 18355454 120 - 22553184 CUAAUUUCCAUUCGUUUUUGCGUAUUAUACAAUAUCUUAAGGGUCAUUCCCCUUGCGUGUAUAUAUAGAAACAACGUUAGUUUAAACAGCUUAUUGAGAUUGUGGAAAAUGGGCAACCAU ....((((((((((((((((.....((((((......((((((......))))))..))))))..)))))))..((..((((.....))))...)).))..)))))))((((....)))) ( -27.60, z-score = -1.85, R) >droSec1.super_268 10052 120 - 18235 CUAAUUUCCAUUCGUUUUUGCGUAUUAUCCAAUAUCUUAAGGGUCAUUCCCCUUGCGUGUAUAUAUAGAAACAACGUUAGUUUAAACAGCUUAUUAAGAUUGUGGAAAAUGGGCAACCAU ....((((((((((((((((..(((......((((..((((((......)))))).)))))))..)))))))...(((......)))..........))..)))))))((((....)))) ( -25.40, z-score = -1.49, R) >droYak2.chr3L 2647141 108 + 24197627 CUAAUUUCCAUUCGUUUCUGUGUA------------UUAAGGGCCAUUCCCCUUGCAUGUAUAUAUAAGAACAACGUUCGUUUAAAAGGCUUAUUAAGGUUGUGGAAAAUGGCCUGCCAU ....(((((((..(((..((((((------------(((((((......)))))).....)))))))..)))...............(((((....))))))))))))((((....)))) ( -24.40, z-score = -0.87, R) >droEre2.scaffold_4784 18862619 113 - 25762168 AUAAUUUCCAUUCGUUUCUGUGUAUUAUCGAAGAUAUUAAGGGUCAUUUCCCUUGC----AUAUAUAGGAACAACGGUCGUUUA---AGCUUAUUGAGGUUGUGGAAAAUGGCCAAACAU .............((((((((((((((((...)))).((((((......)))))).----))))))))))))...((((((((.---(((((....))))).....))))))))...... ( -29.20, z-score = -2.26, R) >consensus CUAAUUUCCAUUCGUUUUUGCGUAUUAUCCAAUAUCUUAAGGGUCAUUCCCCUUGCGUGUAUAUAUAGGAACAACGUUAGUUUAAAAAGCUUAUUGAGGUUGUGGAAAAUGGGCAACCAU ....(((((((..(((((((.((((............((((((......)))))).....)))).)))))))...............(((((....))))))))))))((((....)))) (-20.67 = -20.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:57 2011