| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,035,925 – 19,036,015 |
| Length | 90 |
| Max. P | 0.996580 |
| Location | 19,035,925 – 19,036,015 |
|---|---|
| Length | 90 |
| Sequences | 9 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 79.28 |
| Shannon entropy | 0.39174 |
| G+C content | 0.39417 |
| Mean single sequence MFE | -22.29 |
| Consensus MFE | -17.54 |
| Energy contribution | -19.48 |
| Covariance contribution | 1.94 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.95 |
| SVM RNA-class probability | 0.996580 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19035925 90 + 24543557 UUGCCUUCGGUUUUACCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUGAUUUUCAUUUU--------- ..((........(((((((...)))))))(((((((.((.((((((((....))))))))))))))))).....))..............--------- ( -25.10, z-score = -3.02, R) >droPer1.super_36 623386 99 - 818889 UUACCUUUGCCUUUGCCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUUAUUUUCAUUUUUCUCUCUCU ((((((((((........)))).))))))(((((((.((.((((((((....))))))))))))))))).............................. ( -26.10, z-score = -4.52, R) >dp4.chrXR_group8 7111308 91 + 9212921 UUACCUUUGCCUUUGCCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUUAUUUUCAUUUUU-------- ((((((((((........)))).))))))(((((((.((.((((((((....)))))))))))))))))......................-------- ( -26.10, z-score = -4.08, R) >droEre2.scaffold_4784 18854357 90 + 25762168 UUGCCUUCGGUUUUACCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUGAUUUUCAUUUU--------- ..((........(((((((...)))))))(((((((.((.((((((((....))))))))))))))))).....))..............--------- ( -25.10, z-score = -3.02, R) >droYak2.chr3L 2637022 90 - 24197627 UUGCCUUCGGUUUUACCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUGAUUUUCAUUUU--------- ..((........(((((((...)))))))(((((((.((.((((((((....))))))))))))))))).....))..............--------- ( -25.10, z-score = -3.02, R) >droSec1.super_19 999928 90 + 1257711 UUGCCUUCGGUUUUACCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUGAUUUUCAUUUU--------- ..((........(((((((...)))))))(((((((.((.((((((((....))))))))))))))))).....))..............--------- ( -25.10, z-score = -3.02, R) >droSim1.chr3L 18345705 90 + 22553184 UUGCCUUCGGUUUUACCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUGAUUUUCAUUUU--------- ..((........(((((((...)))))))(((((((.((.((((((((....))))))))))))))))).....))..............--------- ( -25.10, z-score = -3.02, R) >droMoj3.scaffold_6680 13956644 79 + 24764193 ----CUCUGCCUCUACCUGCAACAGGUAAGAAAUUUUCGCUCGCUCGUU-----------CGGCAUUUCAAUGUGUUUUGUUGCUCUUCUCUUU----- ----...((((..((((((...)))))).(((.....(....)....))-----------)))))...(((((.....)))))...........----- ( -10.80, z-score = 0.50, R) >droVir3.scaffold_13049 11840236 77 - 25233164 ------CUACAUUUACCUGCAACAGGUAAGAAAUUUUCGCUCGCUCGUU-----------CGGCAUUUCAAUGUGUUUUGUUGCUCUUCUCUUU----- ------.((((((((((((...)))))).(((((..(((..(....)..-----------))).)))))))))))...................----- ( -12.10, z-score = -0.51, R) >consensus UUGCCUUCGGUUUUACCUGCAACAGGUAAGAAAUGUUCGUACGUUGUUUUUAAACGGCGUCGGCAUUUCAAUUCGCUUGAUUUUCAUUUU_________ ............(((((((...)))))))(((((((.((.((((((((....))))))))))))))))).............................. (-17.54 = -19.48 + 1.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:55 2011