| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,019,371 – 19,019,477 |
| Length | 106 |
| Max. P | 0.570718 |
| Location | 19,019,371 – 19,019,477 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 82.27 |
| Shannon entropy | 0.38090 |
| G+C content | 0.41342 |
| Mean single sequence MFE | -25.21 |
| Consensus MFE | -11.75 |
| Energy contribution | -11.85 |
| Covariance contribution | 0.10 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.570718 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19019371 106 + 24543557 ----------CUUCCCAUGCUGCCAUCGUAUUUUAUGCCCAUUAGGCCUAAUAUGCGUUAAUGCUAUAAAUAAAGCC-UCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU ----------......((((((..(((((((.(((.(((.....))).)))...(((.....(((........))).-....))).)))))))..))))))................ ( -20.90, z-score = -1.15, R) >droSim1.chr3L 18328384 106 + 22553184 ----------CUUCCCAUGCUGCCAUCGUAUUUUAUGCCCAUUAGGCCUAAUAUGCGUUAAUGCUAUAAAUAAGGCC-UCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU ----------..........((((((...(((.((((.(.((.((((((..((((((....))).)))....)))))-).)).).)))).))).))))))................. ( -22.20, z-score = -0.91, R) >droSec1.super_19 983759 106 + 1257711 ----------CUUCCCAUGCUGCCAUCGUAUUUUAUGCCCAUUAGGCCUAAUAUGCGUUAAUGCUAUAAAUAAGGCC-UCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU ----------..........((((((...(((.((((.(.((.((((((..((((((....))).)))....)))))-).)).).)))).))).))))))................. ( -22.20, z-score = -0.91, R) >droYak2.chr3L 2620392 106 - 24197627 ----------CUUCCCAUUCUGCCCUCGUAUUCUAUGCCCAUUAGGGCUAAUAUGCGUUAAUGCUAUAAAUAAGGCC-UCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU ----------.................((((..((.((((....))))))..))))(((((((((((((.((.(((.-.....))).))...)))))))))..)))).......... ( -24.20, z-score = -1.87, R) >droEre2.scaffold_4784 18837833 106 + 25762168 ----------CUUUCCAUUCGGCCUUCGUAUGCUAUGCCCAUUAGGCCUAAUAUGCGUUAAUGCUAUAAAUAAGGCC-UCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU ----------..........((((((((((((.((.(((.....))).)).))))))..............))))))-.....((((((....)))))).................. ( -25.13, z-score = -1.57, R) >droAna3.scaffold_13337 4871363 116 - 23293914 UCUCCUGCUCCUCCUCUUCCCCACGUCGUAUGUUAUGGCCAUUAGGCCUAAUAUGCGUUAAUGCUAUAAAUAAAGCC-UCGUCGCCAUACGAUUAUGGCAUACUAACAAAGUUGGCA ........................(((((((((((.((((....))))))))))))(((((((((((((........-((((......)))))))))))))..))))......))). ( -30.00, z-score = -2.69, R) >dp4.chrXR_group8 7094700 104 + 9212921 -----------UCCUCGUCCUG--GUCGUAUGUUAUGGCCAUUAGGCCUAAUAUGCGCUAAUGCUAUAAAUAAACCCCUCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU -----------.........((--(.(((((((((.((((....))))))))))))))))(((((((((.........((((......)))))))))))))................ ( -28.20, z-score = -3.12, R) >droPer1.super_36 606918 104 - 818889 -----------UCCUCGUCCUG--GUCGUAUGUUAUGGCCAUUAGGCCUAAUAUGCGCUAAUGCUAUAAAUAAACCCCUCUUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU -----------.....((..((--(.(((((((((.((((....))))))))))))))))..))...................((((((....)))))).................. ( -28.00, z-score = -3.51, R) >droWil1.scaffold_180949 3086925 106 - 6375548 ----------UUCGCCAGUUUUCGUUCAUAUGUUAUGCCCAUUAGGCCUAAUAUGCGUUAAUGCUAUAAAUAAAGCC-UCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU ----------...((((....((((....((((((.(((.....))).))))))(((.....(((........))).-....)))...))))...)))).................. ( -23.00, z-score = -1.72, R) >droVir3.scaffold_13049 11824123 91 - 25233164 ----------------------ACGCCAUAUGUUAUGCCCAUUAGGCCUAAUAUGCGCUAAUGUUAUAAAUAAAG----CGACUCCAUACGAAUAUGGCAUACUAACCAACUUCAUU ----------------------..(((((((((((.(((.....))).))))...((((..............))----))...........))))))).................. ( -18.04, z-score = -1.57, R) >droMoj3.scaffold_6680 13937786 103 + 24764193 -------CAUUUCGUAUGGAUAACGCCGUAUGUUAUGCCCAUUAGGCCUAAUAUGCGCUAAUGCUAUAAAUAAAG----CGUCGCCAUACGAUUAUGGCAUACUAACCAACUUC--- -------(((.((((((((...((((.((((((((.(((.....))).))))))))((....))..........)----)))..))))))))..))).................--- ( -32.60, z-score = -3.88, R) >droGri2.scaffold_15110 5721208 104 - 24565398 -------CUUUUGGUGCUGCC--CGGCGUAUGUUAUGCCCAUUAGGCCUAAUAUGCGCUAAUGCUAUAAAUAAAA----CGACUUCAUACGAUUAUGGCAUACUAACAAAGUUCGUU -------...((((((.((((--.(((((((((((.(((.....))).)))))))))))................----((........)).....))))))))))........... ( -28.10, z-score = -1.91, R) >consensus __________CUCCCCAUGCUGCCGUCGUAUGUUAUGCCCAUUAGGCCUAAUAUGCGUUAAUGCUAUAAAUAAAGCC_UCGUCGCCAUACGAUUAUGGCAUACUAACAAACUUCGUU ...........................((((........((((((((.......)).))))))....................((((((....)))))))))).............. (-11.75 = -11.85 + 0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:53 2011