| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,012,570 – 19,012,690 |
| Length | 120 |
| Max. P | 0.849913 |
| Location | 19,012,570 – 19,012,690 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.89 |
| Shannon entropy | 0.34753 |
| G+C content | 0.39393 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -21.28 |
| Energy contribution | -21.46 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.03 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.849913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19012570 120 + 24543557 UACAGAUACAGAUACAUUCUCAUCCCAAUCUCACAGAGCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ...((((...(((........)))...))))....(.((.((((.((((..(((((....)))))....)))).)))).)).)..(((((.(((((((.....))))....))).))))) ( -23.70, z-score = -1.06, R) >droSim1.chr3L 18321678 114 + 22553184 ------UACAGAUACAUUCUCAUCCCAAUCUCACAGAGCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ------.............................(.((.((((.((((..(((((....)))))....)))).)))).)).)..(((((.(((((((.....))))....))).))))) ( -22.70, z-score = -0.99, R) >droSec1.super_19 977025 120 + 1257711 UACAGACACAGAUACAUUCUCAUCCCAAUCUCACAGAGCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ...................................(.((.((((.((((..(((((....)))))....)))).)))).)).)..(((((.(((((((.....))))....))).))))) ( -22.70, z-score = -0.75, R) >droYak2.chr3L 2613675 120 - 24197627 UACAGAUACAGCUACAUUCUCAUCCCAAUCUCACAGAGCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ..........((................((.....))((.((((.((((..(((((....)))))....)))).)))).))))..(((((.(((((((.....))))....))).))))) ( -23.90, z-score = -0.88, R) >droEre2.scaffold_4784 18831056 114 + 25762168 ------UACAGAUACAUUCUCAUCCCAAUCUCACAGAGCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ------.............................(.((.((((.((((..(((((....)))))....)))).)))).)).)..(((((.(((((((.....))))....))).))))) ( -22.70, z-score = -0.99, R) >droAna3.scaffold_13337 4864577 116 - 23293914 ----UACAAAGAUACACUCUCAUCCCAAUCUCAGACAGCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ----.................................((.((((.((((..(((((....)))))....)))).)))).))....(((((.(((((((.....))))....))).))))) ( -22.60, z-score = -0.86, R) >dp4.chrXR_group8 7087842 105 + 9212921 ------UACAGAUACAUUCUCA---CACUGU------GCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ------................---...(((------((.((((.((((..(((((....)))))....)))).)))).))))).(((((.(((((((.....))))....))).))))) ( -26.90, z-score = -1.96, R) >droPer1.super_36 600096 105 - 818889 ------UACAGAUACAUUCUCA---CACUGU------GCCACGCAUCACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ------................---...(((------((.((((...((..(((((....)))))....))...)))).))))).(((((.(((((((.....))))....))).))))) ( -20.80, z-score = -0.28, R) >droWil1.scaffold_180949 3077403 99 - 6375548 ------------UACAUUCUCAUCACAGUCU---------ACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ------------...............((..---------((((.((((..(((((....)))))....)))).)))).))....(((((.(((((((.....))))....))).))))) ( -20.00, z-score = -0.73, R) >droVir3.scaffold_13049 11816779 104 - 25233164 ----------------UACGCAGAGAUUACCCACACAGCUACGCAUGACUAUAAAGCAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ----------------...((...(......).....((.((((.((((..(((((....)))))....)))).)))).))))..(((((.(((((((.....))))....))).))))) ( -23.20, z-score = -0.90, R) >droMoj3.scaffold_6680 13928771 110 + 24764193 ----------UAUGUAUGUACAGAGAUUACCCACAUAGCUAUGCUUGACUAUAAAGCAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ----------(((((..(((.......)))..)))))((.(((((((((..(((((....)))))....))))))))).))....(((((.(((((((.....))))....))).))))) ( -27.40, z-score = -1.53, R) >droGri2.scaffold_15110 5713468 93 - 24565398 ---------------------------CACACACACAGCUACGCAUGACUAUAAAGCAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG ---------------------------..........((.((((.((((..(((((....)))))....)))).)))).))....(((((.(((((((.....))))....))).))))) ( -22.40, z-score = -1.45, R) >consensus ______UACAGAUACAUUCUCAUCCCAAUCUCACAGAGCCACGCAUGACUAUAAAGUAUAUUUUAGCAUGUCAAGCGUUGCGCAUCCGCUUUGAUGUUUAUUUGACAGUUUUUAUAGCGG .....................................((.((((.((((..(((((....)))))....)))).)))).))....(((((.(((((((.....))))....))).))))) (-21.28 = -21.46 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:52 2011