| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,006,907 – 19,007,011 |
| Length | 104 |
| Max. P | 0.921521 |
| Location | 19,006,907 – 19,007,011 |
|---|---|
| Length | 104 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 69.92 |
| Shannon entropy | 0.56065 |
| G+C content | 0.42656 |
| Mean single sequence MFE | -27.35 |
| Consensus MFE | -14.34 |
| Energy contribution | -14.32 |
| Covariance contribution | -0.02 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.921521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19006907 104 + 24543557 -----AUGUCUUGGAAUCCCCAAGAUUUUAGGGCGUGGCCAUCGCAUCUCAAAGUCAUCUCAAAUUGUCUAAAGCUUUCACUGCAAAUGGAGGUGCGUCUUGUCUUGUU -----(((((((((((((.....)))))))))))))(((...((((((((..((.((........)).))...((.......)).....))))))))....)))..... ( -30.20, z-score = -2.39, R) >droGri2.scaffold_15110 18857848 104 + 24565398 GUGGUUAGUUUUGCGAGACUUGUCUUUAUAGAAUAUGGUUAGAGUAGCAGAAGGAACUCAAGAAUAAUAAUAAACAGAAACUUUAAGCAAAGCCGAAGCGGAAU----- ((..(..(((((((..((((..(((....)))....)))).((((..(....)..))))...........................)))))))..).)).....----- ( -16.80, z-score = 0.20, R) >droEre2.scaffold_4784 18825399 100 + 25762168 -----AUGUUUUGAAAUCCCCAAGAUUUCAGGGCG-GGGCAUCGCAUCUCAAAGUCAUCUGAAAUGGCAUAGAGCUUUCACUGCAAAUGGAGGUGUGA---GCCUUGUU -----..(((((((((((.....)))))))))))(-((((.(((((((((...(((((.....))))).....((.......)).....)))))))))---)))))... ( -37.10, z-score = -2.99, R) >droYak2.chr3L 2603015 100 - 24197627 -----AUGUUUUGAAAUCCCCAACAUUUUAGGGCG-GGGCAUCGCAUCCCAAAGUCAUCUUAAAUGGUAUUCAGCUUUCACUGCAAAUGAAGGCGUGA---GUCUUGUU -----..((((((((((.......))))))))))(-((((.((((...((((((....)))...)))......(((((((.......)))))))))))---)))))... ( -22.90, z-score = 0.03, R) >droSec1.super_19 971467 101 + 1257711 -----AUGUCUUGGAAUCCACAAGAUUUUAGGGCGUGGCCAUCGCAUCUCAAAGUCAUCUCAAAGUGUCUAAAGCUUUCACUGCAAAUGGAGGUGUGC---GUCUUGUU -----(((((((((((((.....)))))))))))))(((...((((((((..((.(((......))).))...((.......)).....)))))))).---)))..... ( -28.30, z-score = -1.69, R) >droSim1.chr3L 18316077 101 + 22553184 -----AUGUCUUGGAAUCCACAAGAUUUUAGGGCGUAGCCAUCGCAUCUCAAAGUCAUCUCAAAGUGUCUAAAGCUUUCACUGCAAAUGGAGGUGUGA---GUCUUGUU -----(((((((((((((.....))))))))))))).....(((((((((..((.(((......))).))...((.......)).....)))))))))---........ ( -28.80, z-score = -2.21, R) >consensus _____AUGUCUUGGAAUCCCCAAGAUUUUAGGGCGUGGCCAUCGCAUCUCAAAGUCAUCUCAAAUUGUAUAAAGCUUUCACUGCAAAUGGAGGUGUGA___GUCUUGUU .......(((((((((((.....)))))))))))........((((((((..((....)).............((.......)).....))))))))............ (-14.34 = -14.32 + -0.02)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:50 2011