| Sequence ID | dm3.chr3L |
|---|---|
| Location | 19,003,977 – 19,004,091 |
| Length | 114 |
| Max. P | 0.530244 |
| Location | 19,003,977 – 19,004,091 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 78.74 |
| Shannon entropy | 0.48430 |
| G+C content | 0.56845 |
| Mean single sequence MFE | -42.33 |
| Consensus MFE | -24.63 |
| Energy contribution | -24.45 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.05 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 19003977 114 + 24543557 ---UUACUUCCCGCACCAGACGCAUUGCCCGGCGGCGUGGUGAUUAUGUUCACUACCGGCGAUCGCAGUUGGAUAUUAUUGUCACGUUCGCUGACCAGCAGCAAAUCGGGCGGGGCG ---.....((((((.((.((....((((.(((((((((((..((.(((((((..((..((....)).))))))))).))..))))).))))))....))))....)))))))))).. ( -41.50, z-score = -0.94, R) >droVir3.scaffold_13049 11807932 117 - 25233164 UUGGCUGCGGCCGCGCCAGAUGCAUUGCCGGGAGGCGUUGUGAUUAUAUUAACCACGGGCGUUCUCAGUUGUAUAUUAUUGUCACGUUCGCUGACCAGCAACAAAUCUGGCGGCGCA ..(((....)))(((((((((...((((.((..((((.((((((.(((.((((.(((((....))).)).)).)).))).))))))..))))..)).))))...))))))).))... ( -44.60, z-score = -1.40, R) >droYak2.chr3L 2600092 114 - 24197627 ---UUACUUCCCCCACCGGAUGCAUUGCCCGGCGGCGUGGUGAUUAUGUUCACCACCGGCGAUCGCAGUUGGAUAUUAUUGUCACGUUCGCUGACCAGCAGCAAAUCGGGCGGUGCG ---.....(((......))).(((((((((((..(((((((((......)))))))((((((.((......((((....)))).)).)))))).......))...))))))))))). ( -47.00, z-score = -2.35, R) >droEre2.scaffold_4784 18822453 114 + 25762168 ---UUACUUCCCCCACCGGACGCAUUGCCCGGCGGCGUGGUGAUUAUGUUCACCACCGGCGAUCGCAGUUGGAUAUUAUUGUCACGUUCGCUGACCAGCAGCAAGUCGGGCGGUGCG ---.....(((......)))(((((((((((((.(((((((((......)))))))((((((.((......((((....)))).)).)))))).......))..))))))))))))) ( -50.80, z-score = -3.16, R) >droSec1.super_19 968600 114 + 1257711 ---UUACUUCCCGCACCGGACGCAUUGCCCGGCGGCGUGGUGAUUAUGUUCACCACCGGCGAUCGCAGUUGGAUAUUAUUGUCACGUUCGCUGACCAGCAGCAAGUCGGGCGGGGCG ---.....((((((.(((((((.(((((.((.(((..((((((......))))))))).))...)))))..((((....)))).)))))((((.....)))).....)))))))).. ( -46.70, z-score = -1.58, R) >droSim1.chr3L 18313184 114 + 22553184 ---UUACUUCCCGCACCGGACGCAUUGCCCGGCGGCGUGGUGAUUAUGUUCACCACCGGCGAUCGCAGUUGGAUAUUAUUGUCACGUUCGCUGACCAGCAGCAAGUCGGGCGGGGCG ---.....((((((.(((((((.(((((.((.(((..((((((......))))))))).))...)))))..((((....)))).)))))((((.....)))).....)))))))).. ( -46.70, z-score = -1.58, R) >droAna3.scaffold_13337 4856589 114 - 23293914 ---CCACUGCCGCCGACGGAGGCAUUGCCCGGCGGCGUUGUGAUUAUGUUCACCACCGGCGAUCGCAGUUGUAUAUUAUUGUCACGUUCGCUGACCAGCAGCAGGUCCGGCGGGGCG ---.....(((.(((.((((.((..(((..(((((((.((((((.(((...((.((..((....)).)).))....))).))))))..))))).)).)))))...)))).)))))). ( -41.10, z-score = 0.57, R) >dp4.chrXR_group8 7079342 114 + 9212921 ---UUGCUUGCCGAACCGGAGGCAUUGCCCGGUGGCGUGGUGAUUAUAUUAACCACCGGCGAUCGCAGUUGUAUAUUAUUGUCACGUUCGCUGACCAGCAGCAGGUCGGGCGGGGCG ---..(((((((........))))((((((((((((((((..((.((((((((.....((....)).)))).)))).))..))))).)))))((((.......))))))))))))). ( -42.10, z-score = -0.41, R) >droPer1.super_36 591573 114 - 818889 ---UUGCUUGCCGUACCGGAGGCAUUGCCCGGUGGCGUGGUGAUUAUAUUAACCACCGGCGAUCGCAGUUGUAUAUUAUUGUCACGUUCGCUGACCAGCAGCAGGUCGGGCGGGGCG ---..(((((((........))))((((((((((((((((..((.((((((((.....((....)).)))).)))).))..))))).)))))((((.......))))))))))))). ( -42.10, z-score = -0.28, R) >anoGam1.chr3R 7199630 90 - 53272125 --------------------------GUCUGGCCA-GUGCCAGAACCGGUGCUUGCGGAUGAUUUCACUUUAAGCAUUUGCUCGCGAUCACUAGUUAGCAGUAGGUCGGGUGGUGCA --------------------------.((((((((-.(((...(((..(((.(((((((.....))......(((....)))))))).)))..))).))).).)))))))....... ( -28.80, z-score = -0.22, R) >droWil1.scaffold_180949 3066764 114 - 6375548 ---UUUUGUGCCGUGCCAGAGGCAUUGCCUGGCGGCGUUGUGAUUAUAUUAACCACAGGCGUUCGCAGUUGUAUAUUAUUGUCACGUUCACUGACCAGCAACAAAUCUGGCGGUGCA ---...((..((..((((((....((((.((((((.(.((((((.(((.((..((...((....))...))..)).))).))))))..).))).)))))))....))))))))..)) ( -38.60, z-score = -1.17, R) >droGri2.scaffold_15110 5704250 117 - 24565398 UUGGUUGCUGCAACGCCAGUUGCAUUGCCCGGAGGCGUGGUGAUUAUAUUAACCACCGGUGAUCUGAGUUGUAUAUUAUUGUCACGUUCGCUGACCAGCAGCAAAUCUGGCGGCGCA .........((..((((((((((..(((..((.((((..(((((.(((.((((.(((((....))).)).)).)).))).)))))...))))..)).)))))))..))))))..)). ( -37.90, z-score = -0.09, R) >consensus ___UUACUUCCCGCACCGGACGCAUUGCCCGGCGGCGUGGUGAUUAUGUUCACCACCGGCGAUCGCAGUUGUAUAUUAUUGUCACGUUCGCUGACCAGCAGCAAGUCGGGCGGGGCG .....................((.((((((((((((((((((...........)))).))).)))).......................((((.....))))....))))))).)). (-24.63 = -24.45 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:47 2011