| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,661,405 – 5,661,522 |
| Length | 117 |
| Max. P | 0.562209 |
| Location | 5,661,405 – 5,661,522 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 68.71 |
| Shannon entropy | 0.59990 |
| G+C content | 0.51885 |
| Mean single sequence MFE | -36.63 |
| Consensus MFE | -15.94 |
| Energy contribution | -17.33 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.562209 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5661405 117 + 23011544 GAAUGCAGCCCCUU-ACUUGGUUGACAGACAGCUCUGAGUUUGUUUGUCGGCUGAGCAAUGGGCG-AAACCAACCCGGCGUAUACGUAAUGGAGCUUAUUGAUGAGCGAAAGUAAGCCC (.((((.((((.((-.((..(((((((((((((.....).))))))))))))..)).)).)))).-...((.....)).)))).).....((.(((((((..........))))))))) ( -39.00, z-score = -2.44, R) >droSim1.chr2L 5454766 116 + 22036055 GAAUGCAGCCCCU--AGUUGGUUGACAGACAGCUCGGAGUUUGUUUGUCGGCUGAGCAAUGGGCG-AAACCAACCCGGCGUAUACGUAAUGGGGCUUAUUGAUGAGCGAAAGUAAGCCC ....((((((((.--.(((((((((((((((((.....).))))))))).(((.(....).))).-.)))))))...(((....)))...)))))).........((....))..)).. ( -40.90, z-score = -2.03, R) >droSec1.super_5 3740190 116 + 5866729 GAAUGCAGCCCCU--AGUUGGUUGACAGACAGCUCGGAGUUUGUUUGUCGGCUGAGCAAUGGGCG-AAACCAACCCGGCGUAUACGUAAUGGGGCUUAUUGAUGAGCGAAAGUAAGCCC ....((((((((.--.(((((((((((((((((.....).))))))))).(((.(....).))).-.)))))))...(((....)))...)))))).........((....))..)).. ( -40.90, z-score = -2.03, R) >droYak2.chr2L 8792998 108 - 22324452 GAAUGCAGUUUU---ACUUGGUUGAGAGACAGCUCCUAGUUUGUUUGUCGGCUCAGCAAUGGACGCAAACCAACCUAAUGGA--------GGAGCUCUUUGUUGCGUGGUAGUAAGCCC ..((((((....---.....(((....)))(((((((.....(((((.((..(((....))).)))))))...((....)))--------)))))).....))))))(((.....))). ( -30.20, z-score = -0.13, R) >droEre2.scaffold_4929 5749872 113 + 26641161 GAAUGCAGACCUC---UUUGGUUGACCGACAGCUCGGAGUUUGUUUGUCGGCUUAGCAACGGGGA--AACCAGCC-GGCGUAUUCGAAAUGGGCCCUAUUGAUCAGCGAAAGUAAGCCC ((((((((((..(---((((((((.....)))).)))))...))))(((((((........((..--..))))))-))))))))).....((((.(....)....((....))..)))) ( -37.10, z-score = -1.01, R) >droAna3.scaffold_12916 11105083 112 + 16180835 AAUCGCAACUCCCAUGCCAGACGGACAGUUGGUCCAUCUUGUGUUUGCCGGAUCAGCGGGGAAGGCUAACAGGGCGGAUGCGA--GAUUUGGAUUUCACUUCACAGCCAUGCUC----- ....(((..((((.((((....)).))((((((((..(........)..)))))))).)))).((((...(((((....))((--(((....))))).)))...)))).)))..----- ( -31.70, z-score = 0.87, R) >consensus GAAUGCAGCCCCU__ACUUGGUUGACAGACAGCUCGGAGUUUGUUUGUCGGCUGAGCAAUGGGCG_AAACCAACCCGGCGUAUACGUAAUGGAGCUUAUUGAUGAGCGAAAGUAAGCCC .((((.((((((.......(((((((((((((........)))))))))))))..((..((((..........))))..)).........))))))))))................... (-15.94 = -17.33 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:39 2011