| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,995,150 – 18,995,210 |
| Length | 60 |
| Max. P | 0.677154 |
| Location | 18,995,150 – 18,995,210 |
|---|---|
| Length | 60 |
| Sequences | 9 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 68.83 |
| Shannon entropy | 0.63088 |
| G+C content | 0.47657 |
| Mean single sequence MFE | -16.89 |
| Consensus MFE | -7.03 |
| Energy contribution | -6.73 |
| Covariance contribution | -0.29 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18995150 60 - 24543557 GCUUUGCAGGAGCCCAAACGUGUCUCAAAUGCAAGGCAGGAAAAGUAAGAUCAGAUCUAA------- ((((((((.((((.(....).).)))...)))))))).......................------- ( -14.60, z-score = -1.17, R) >droWil1.scaffold_180949 3056709 50 + 6375548 CCUUUGCAGCAGCCCAAAUGUGCCUAAAGUGUAAGGCAGGCAAGGUGGGA----------------- .((((((.(((.......)))((((........))))..)))))).....----------------- ( -12.80, z-score = 0.94, R) >droGri2.scaffold_15110 5694588 53 + 24565398 CCUUUGCCGGCGCACAUCUGUGCGGCAAGUGCAAAGUGGGCAAGGUGAGUCCA-------------- .(((((((.((((((....)))).((....))...)).)))))))........-------------- ( -21.30, z-score = -1.32, R) >droMoj3.scaffold_6680 13907670 64 - 24764193 CCUAUGCAGGUGCGCAUAUGUGUGCCAAGUGUAAAGUGGGAAAGGUAAUUAUAACUGGAAUUUA--- ((((((((((..(((....)))..))...)))...)))))........................--- ( -13.90, z-score = -0.43, R) >droAna3.scaffold_13337 4847286 65 + 23293914 GCUUUGCGGGAGCUCAAAAUUGCGUGAAAUGCAAGGCAGGAAAGGUGGGUGAAGUUUUCAUCUAA-- ((((((((...((.((....)).))....))))))))........(((((((.....))))))).-- ( -18.70, z-score = -1.76, R) >droEre2.scaffold_4784 18813724 67 - 25762168 GCUUUGCAGGAGCUCAAACGUGUCUCAAGUGCAAGGCAGGAAAGGUAAGAUCUGAUCCAGUAUCUGA ((((((((.((((........).)))...)))))))).(((..((......))..)))......... ( -18.60, z-score = -0.77, R) >droYak2.chr3L 2591309 60 + 24197627 GCUUUGCAGGAGCUCAAACGUGCCUCAAAUGCAAGGCAGGAAAGGUAAGAACUGAUCUAA------- ((((((((.((((........).)))...)))))))).(((..(((....)))..)))..------- ( -18.10, z-score = -1.71, R) >droSec1.super_19 960119 60 - 1257711 GCUUUGCAGGAGCCCAAACGUGUCUCAAAUGCAAGGCAGGAAAAGUAAGAUCAGAUCUAA------- ((((((((.((((.(....).).)))...)))))))).......................------- ( -14.60, z-score = -1.17, R) >droSim1.chr3L 18303997 60 - 22553184 GCUUUGCAGGAGCACAAACGUGUCUCAAAUGCAAGGCAGGAAAAGUAAGAUCAGAUCUAA------- ((((((((.((((((....))).)))...)))))))).......................------- ( -19.40, z-score = -3.57, R) >consensus GCUUUGCAGGAGCCCAAACGUGUCUCAAAUGCAAGGCAGGAAAGGUAAGAUCAGAUCUAA_______ .(((((((.((((........)).))...)))))))............................... ( -7.03 = -6.73 + -0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:46 2011