| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,964,504 – 18,964,586 |
| Length | 82 |
| Max. P | 0.919154 |
| Location | 18,964,504 – 18,964,586 |
|---|---|
| Length | 82 |
| Sequences | 5 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 87.42 |
| Shannon entropy | 0.21709 |
| G+C content | 0.55165 |
| Mean single sequence MFE | -21.70 |
| Consensus MFE | -19.16 |
| Energy contribution | -19.36 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.919154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18964504 82 + 24543557 UGCCAAUGUAUUUCUCUCAGUGCACCCACAAUUGGCUGGCAUUGUCAACUGGGCGCCACGCGCCCUUCUCUCUCGCACUCAC (((..............((((((..(((....)))...))))))......((((((...)))))).........)))..... ( -22.40, z-score = -1.80, R) >droEre2.scaffold_4784 18783734 80 + 25762168 -UAUGCAAUAUUUCUCUCAGUGCGCCCACAAUUGGCUGGCAUUGUCAACUGGGCGCCACACGCCCC-CUCCUUGCCUCUCAC -...((((.........(((((((((.......)))..))))))......(((((.....))))).-....))))....... ( -20.60, z-score = -1.22, R) >droYak2.chr3L 2565433 80 - 24197627 -UAUACAAUAUUUUUCCCAGUGCACCCACAAUUGGCUGGCAUUGUCAACUGGGCGCU-CGCGCCCUGCUCUUUCGCACUCAC -................((((((..(((....)))...))))))......(((((..-..)))))(((......)))..... ( -21.30, z-score = -1.79, R) >droSec1.super_19 929819 82 + 1257711 UUCCAAUGUAUUUCUCUCAGUGCACCCACAAUUGGCUGGCAUUGUCAACUGGGCGCCACGCGCCCUUCUCUCUCGCACUCAC ..................(((((........(((((.......)))))..((((((...)))))).........)))))... ( -21.80, z-score = -2.35, R) >droSim1.chr3L 18270380 82 + 22553184 UGCCAAUGUAUUUCUCUCAGUGCACCCACAAUUGGCUGGCAUUGUCAACUGGGCGCCACGCGCCCUUCUCUCUCGCACUCAC (((..............((((((..(((....)))...))))))......((((((...)))))).........)))..... ( -22.40, z-score = -1.80, R) >consensus UUCCAAUGUAUUUCUCUCAGUGCACCCACAAUUGGCUGGCAUUGUCAACUGGGCGCCACGCGCCCUUCUCUCUCGCACUCAC .................((((((..(((....)))...))))))......((((((...))))))................. (-19.16 = -19.36 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:42 2011