| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,925,362 – 18,925,462 |
| Length | 100 |
| Max. P | 0.846211 |
| Location | 18,925,362 – 18,925,462 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 76.84 |
| Shannon entropy | 0.30304 |
| G+C content | 0.31033 |
| Mean single sequence MFE | -18.60 |
| Consensus MFE | -13.69 |
| Energy contribution | -13.70 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.846211 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18925362 100 + 24543557 UCAACAGUUUAGGUCUUGAAGAUAAUCAGCUUCCGCUGAUUAUGCUCAAAAUAAGUACAUUAAGUGACUUGAAAGAUAUUAAUCCUCAUUCAACGGGAAU .......((((((((((((..(((((((((....)))))))))..)))).......((.....)))))))))).........((((........)))).. ( -23.00, z-score = -2.22, R) >droSim1.chr3L 18231017 85 + 22553184 UCAACAUUUUAGGUUUUGAAGAUUGG-GGCUUCAACUGAUUGUGCUCAAAAUAAGUACAUUAAGUGACUUAAAACAUAUUUAUUAU-------------- ......(((((((((.(((((.....-..)))))(((...((((((.......))))))...))))))))))))............-------------- ( -16.50, z-score = -1.78, R) >droSec1.super_19 890591 81 + 1257711 UCAACAUUUUAGGUUUUGAAGAUUGG-GGCUUCAACUGAUUGUGCUCAAA----GUACAUUAAGUGACUUGAAACAUAUUUAUUAU-------------- ......(((((((((.(((((.....-..)))))(((...(((((.....----)))))...))))))))))))............-------------- ( -16.30, z-score = -1.40, R) >consensus UCAACAUUUUAGGUUUUGAAGAUUGG_GGCUUCAACUGAUUGUGCUCAAAAUAAGUACAUUAAGUGACUUGAAACAUAUUUAUUAU______________ .......((((((((..((((........)))).(((...((((((.......))))))...)))))))))))........................... (-13.69 = -13.70 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:40 2011