| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,884,258 – 18,884,355 |
| Length | 97 |
| Max. P | 0.939393 |
| Location | 18,884,258 – 18,884,355 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 88.14 |
| Shannon entropy | 0.20816 |
| G+C content | 0.52481 |
| Mean single sequence MFE | -25.04 |
| Consensus MFE | -20.46 |
| Energy contribution | -21.30 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939393 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18884258 97 - 24543557 UGGACAUAAAAAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUCUCCCCACACCUCCUAAAACUGAGCGCCACUAAAGCGGGCAGACA ............(((((((((......)))))))))....(((((((...............(((........))).((.......))))))))).. ( -27.60, z-score = -2.03, R) >droSim1.chr3L 18189551 96 - 22553184 UGGCCAUAAAAUGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUCU-CCCCCACUCCUUAAAACUGAACGCCACUAAAGCGGGCAGACA .(((......(((((((((((......))))))))))).....)))........-................(((..(((.......)))..)))... ( -29.10, z-score = -3.17, R) >droSec1.super_19 849916 97 - 1257711 UGGCCAUAAAAUGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGGACGACCUCUCCCCCCACCCCCUAAAACUGAACGCCACUAAAGCGGGCAGACA ...(((....(((((((((((......)))))))))))....)))..........................(((..(((.......)))..)))... ( -29.10, z-score = -2.73, R) >droYak2.chr3L 2442570 97 + 24197627 UCGCCAUAAAAAGACAGCCUUUUGCCUGCGGCUGUUAUCCUUUGCCCGACAUAUCCCCACACCCCUCUAAACUGAACGCCCUUAAAGCAAACAGACA (((.((......(((((((..........)))))))......))..)))......................(((...((.......))...)))... ( -12.60, z-score = -0.51, R) >droEre2.scaffold_4784 18700555 97 - 25762168 UGGCCAUAAAAAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCAACCUAUACCCCCAACCCUCUAAACAGAACGCCACUAAAGCGGGCAGACA ............(((((((((......)))))))))....(((((((..................(((....)))..((.......))))))))).. ( -26.80, z-score = -2.50, R) >consensus UGGCCAUAAAAAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUCUCCCCCCACCCCUUAAAACUGAACGCCACUAAAGCGGGCAGACA (((.((......(((((((((......)))))))))......)).))).......................(((..(((.......)))..)))... (-20.46 = -21.30 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:35 2011