| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,824,389 – 18,824,500 |
| Length | 111 |
| Max. P | 0.614222 |
| Location | 18,824,389 – 18,824,500 |
|---|---|
| Length | 111 |
| Sequences | 14 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 67.73 |
| Shannon entropy | 0.76386 |
| G+C content | 0.43086 |
| Mean single sequence MFE | -27.24 |
| Consensus MFE | -12.22 |
| Energy contribution | -11.51 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 1.91 |
| Mean z-score | -0.50 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614222 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18824389 111 - 24543557 GUAAUGGCCAUAUUUUGGGUUACGGAAGCCUUGCCUCUCUAUGUGACGUCCAUGAUACCGAUUGUGGCCUUCCCAAUAAUGGGUAUAAUGGUAAGUUCUUUAUUUCACAUA----- ((((.(((....(((((.....)))))))))))).....(((((((.((((((.(((((.(((((((.....)).))))).))))).))))..........)).)))))))----- ( -26.90, z-score = -0.19, R) >droSim1.chr3L 18126568 111 - 22553184 GUAAUGGCCAUAUUUUGGGUAACGGAAGCCUUGCCUCUCUAUGUGACGUCCAUGAUACCCAUCGUGGCCUUCCCUAUAAUGGGUAUAAUGGUAAGUUCUUUAUUUCAAAUC----- ........(((((...(((((((....)..))))))....)))))((..((((.((((((((..(((......)))..)))))))).))))...))...............----- ( -29.10, z-score = -1.32, R) >droSec1.super_19 788571 111 - 1257711 GUAAUGGCCAUAUUUUGGGUGACGGAAGCCUUGCCUCUCUAUGUGACGUCCAUGAUACCCAUCGUGGCCUUCCCUAUAAUGGGUAUAAUGGUAAGUUCAUUAUUUCAAAUA----- (((((((.(((((...(((..((....)..)..)))....)))))((..((((.((((((((..(((......)))..)))))))).))))...)))))))))........----- ( -32.10, z-score = -1.62, R) >droYak2.chr3L 8950612 111 + 24197627 GUAAUGGCUAUCUUUUGGGUUACGGAAGCCUUGCCGCUCUACGUGACGUCCAUGAUACCCAUUGUGGCCUUCCCUGUCAUGGGUAUAAUGGUAAGUUCUUUUUCAGUAAAA----- (((.((((...((((((.....))))))....))))...)))..(((..((((.((((((((.(..(......)..).)))))))).))))...)))..............----- ( -28.90, z-score = -0.66, R) >droEre2.scaffold_4784 10654015 111 + 25762168 GUAAUGGCUAUUUUUUGGGUGACGGAAGCCUUGCCGCUCUAUGUGACCUCCAUGAUACCCAUUGUGGCCUUCCCUGUCAUGGGUAUAAUGGUAAGUUUUCUUGUAGUAAAA----- ......(((((.....((((.(((..(((......)))...))).))))((((.((((((((.(..(......)..).)))))))).))))...........)))))....----- ( -29.50, z-score = -0.77, R) >droAna3.scaffold_13337 4685475 111 + 23293914 GUUAUGGCCGUGUUUUGGGUGACGGAAGCUCUUCCCCUUUAUAUAACCUCCAUGAUACCAAUUGUUGCUUUCCCUGUAAUGGGAAUAAUGGU--GAUUUUUUAACUCUUUACC--- (((((((..((((...(((.(((....).))...)))...)))).....)))))))...((..((..(((((((......)))))....)).--.))..))............--- ( -22.80, z-score = -0.19, R) >dp4.chrXR_group6 9182297 115 + 13314419 GUGAUGGCCGUGUUCUGGGUGACAGAAGCCCUGCCCCUCUAUGUGACCUCAAUGAUACCCAUUGUGGCGUUCCCCGUGAUGGGAAUUAUGGUGAGACUUUUAUGCUCCUUAGCUA- .(((.((.((..(...(((.(.(((.....)))))))...)..)).)))))(((((.(((((..(((......)))..))))).)))))((.(((.(......))))))......- ( -32.50, z-score = -0.83, R) >droPer1.super_9 1215506 115 + 3637205 GUGAUGGCCGUGUUUUGGGUGACAGAAGCCCUGCCCCUCUAUGUGACCUCAAUGAUACCCAUUGUGGCGUUCCCCGUGAUGGGAAUUAUGGUGAGACUUUUAUGCUCCUUAGCUA- .(((.((.((..(...(((.(.(((.....)))))))...)..)).)))))(((((.(((((..(((......)))..))))).)))))((.(((.(......))))))......- ( -32.50, z-score = -1.04, R) >droWil1.scaffold_180955 71696 113 - 2875958 GUAAUGGCCAUAUUCUGGGUGACAGAAGCAUUGCCACUCUAUGUUACCUCAAUGAUGCCAAUUGUAGCGUUUCCCAUAAUGGGCAUAAUGGUAAGUAAAAGCUAGAUAAAUUA--- ....((((.((.(((((.....)))))..)).)))).((((..(((((......(((((.(((((.(......).))))).)))))...)))))((....)))))).......--- ( -24.50, z-score = 0.46, R) >droMoj3.scaffold_6680 1080684 116 + 24764193 AUAAUGGCUGUGUUUUGGGUCACAGAGGCAUUGCCCUUAUAUGUUACAUCAAUGAUACCAAUUGUUGCAUUUCCUACAAUGGGAAUAAUGGUAAAAAAAUACCGGCUCUUAUUAGU ((((.(((((((((((..(((.....))).(((((.((((((((.(((....((....))..))).)))).((((.....)))))))).))))).)))))).))))).)))).... ( -23.20, z-score = 0.78, R) >droVir3.scaffold_13049 7122146 111 + 25233164 AUAAUGGCCGUAUUCUGGGUGACAGAAGCGUUGCCUCUUUAUGUUACAUCAAUGAUACCAAUUGUUGCAUUUCCCACGAUGGGCAUUAUGGUAAAUAGAACUCUCGUUAUU----- ((((((.((((....(((((((((((((.(....).)))).))))))..(((..((....))..)))......)))..)))).))))))(((((..((....))..)))))----- ( -23.20, z-score = 0.40, R) >droGri2.scaffold_15110 402061 111 + 24565398 AUAAUGGCUGUAUUUUGGGUCACUGAAGCCCUGCCCCUCUACGUUACAUCAAUGAUACCAAUUGUUGCAUUUCCCACUAUGGGCAUCAUGGUAAAUAUCUCGAUCGUUAUC----- ((((((..((......((((.......))))(((((.............(((..((....))..))).............)))))...............))..)))))).----- ( -18.87, z-score = 1.44, R) >anoGam1.chr2L 41325388 99 - 48795086 ACGAUGUCACUGUACUGGGUGACGGAAGCGUUACCGCUGCCCGUUACGUCGAUGUUACCGAUCGUCCUGUUCCCGGUGCUCGGUGUACUGGAAACCGAU----------------- ...........((((((((((((((.((((....))))..)))))))(.((((.......)))).)......)))))))(((((.........))))).----------------- ( -34.70, z-score = -1.06, R) >apiMel3.Group8 9562308 94 + 11452794 UUAUUAGCUGGUUAUUGGAUUACUGAAUGUUUUCCUAUGGCAGUUACUUCGAUAAUUCCAGUUGUGUUAUUUCCAGCAUUUGGAAUAUUAACUU---------------------- ....(((((((((((((((..((((.(((......)))..))))...))))))))..))))))).((((.((((((...))))))...))))..---------------------- ( -22.60, z-score = -2.39, R) >consensus GUAAUGGCCGUAUUUUGGGUGACGGAAGCCUUGCCCCUCUAUGUGACCUCAAUGAUACCAAUUGUGGCCUUCCCUAUAAUGGGUAUAAUGGUAAGUUUUUUAUUCCUAAUA_____ ......(((((.(((((.....)))))....(((((.............(((((((....))))))).............)))))..)))))........................ (-12.22 = -11.51 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:30 2011