| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,796,755 – 18,796,842 |
| Length | 87 |
| Max. P | 0.500000 |
| Location | 18,796,755 – 18,796,842 |
|---|---|
| Length | 87 |
| Sequences | 13 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 77.93 |
| Shannon entropy | 0.47331 |
| G+C content | 0.38454 |
| Mean single sequence MFE | -15.99 |
| Consensus MFE | -10.79 |
| Energy contribution | -10.96 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3L 18796755 87 + 24543557 -----------UACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUACUGAAUAUAUCAUAACCAUACUCCUUAGCAUCUGGAAGAGAUU -----------...(((((((...)))).........(.(((((((((((...))))))))))).).......)))(((.........)))....... ( -16.50, z-score = -0.63, R) >droSim1.chr3L 18098239 87 + 22553184 -----------UACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUACUGAAUAUAUCAUAACCAUACUCCUUAGCAUCUGGAAGAGAUU -----------...(((((((...)))).........(.(((((((((((...))))))))))).).......)))(((.........)))....... ( -16.50, z-score = -0.63, R) >droSec1.super_19 760752 87 + 1257711 -----------UACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUACUGAAUAUAUCAUAACCAUACUCCUUAGCAUCUGGAAGAGAUU -----------...(((((((...)))).........(.(((((((((((...))))))))))).).......)))(((.........)))....... ( -16.50, z-score = -0.63, R) >droYak2.chr3L 8922081 87 - 24197627 -----------UACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUACUGAAUAUAUCAUAACCAUACUCCUUAGCAUCUGUAAGAGAUA -----------...(((((((...)))).........(.(((((((((((...))))))))))).).......)))........((((.....)))). ( -16.00, z-score = -0.50, R) >droEre2.scaffold_4784 10625865 87 - 25762168 -----------UACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUACUGAAUAUAUCAUAACCAUACUCCUUAGCAUCUGGAAGAGAUA -----------......((((...)))).((((....(.(((((((((((...))))))))))).)..........(((.........)))...)))) ( -17.40, z-score = -0.80, R) >droAna3.scaffold_13337 4654975 87 - 23293914 -----------UACGUAGAGCUCUGCUCAUAUCACAAGCUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCAUAUUCCUUAGCAUCUGAAAGAAAUA -----------....(((((((..(((.........)))(((((((((((...))))))))))).................))).))))......... ( -14.20, z-score = -0.43, R) >dp4.chrXR_group6 9143468 87 - 13314419 -----------UACGUAGAGCUCGGCUCUUAUCACAAGCUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCGUAUUCCUUAGCAUCUGAAAGAGAUU -----------((((.(((((...)))))........(.(((((((((((...))))))))))).).....)))).........((((.....)))). ( -16.30, z-score = -0.22, R) >droPer1.super_9 1175650 87 - 3637205 -----------UACGUAGAGCUCGGCUCUUAUCACAAGCUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCGUAUUCCUUAGCAUCUGAAAGAGAUU -----------((((.(((((...)))))........(.(((((((((((...))))))))))).).....)))).........((((.....)))). ( -16.30, z-score = -0.22, R) >droWil1.scaffold_180949 1650636 87 + 6375548 -----------UACGUGGAGCUCUGCUCAUAUCACAAGAUGUGUUCGGUACAUUAUCGAAUAUAUCAUAACCAUAUUCCUUAGCAUCUGUAAACGAAA -----------..(((.((((...)))).........(((((((((((((...)))))))))))))..........................)))... ( -19.90, z-score = -2.17, R) >droVir3.scaffold_13049 7096564 85 - 25233164 -----------UAGUUUGAGCUCUGCUCAUAUCACAUGCUGUAUUCGGUACAUUAUCGAAUAUAUCAAAACCGUUUUCCUUCUUAUCUAUAACCAU-- -----------..((((((((...))))........((.(((((((((((...))))))))))).)))))).........................-- ( -14.90, z-score = -2.66, R) >droMoj3.scaffold_6680 1048852 87 - 24764193 -----------UAGCUUGAGCUCUGCUCAUAUCACAUGCUGUAUUCGGUAAAUUAUCGAAAAUAUUAAAACCAUUUUCCUUUUCAUCUGCAAGCAAGU -----------..((((((((...))))...........(((.(((((((...))))))).)))..........................)))).... ( -12.70, z-score = -0.25, R) >droGri2.scaffold_15110 374744 84 - 24565398 -----------UAAGUUGAGCUCUGCUCAUAUCACAUGCUGUCUUCGGUACACUAUCGAAUAUAUCAAAACCGUAUUCCUUUUCAUCUGUGAACG--- -----------.....(((((...)))))..((((((((((....))))).......((((((.........)))))).........)))))...--- ( -14.90, z-score = -1.56, R) >anoGam1.chr2L 2021966 85 - 48795086 GAGUAGUGAUGUCGUCAGCCCACUGUCCGCUUCCUCAAAU---CCCGGAAUGUCCGAGAAAACGUUGCAGCCACUCUCUUCUGGAUCU---------- (((.((((.(((((((((....)))..............(---(.(((.....))).))..)))..)))..)))))))..........---------- ( -15.80, z-score = 0.82, R) >consensus ___________UACGUAGAGCUCUGCUCAUAUCACAAGCUGUAUUCGGUACAUUAUCGAAUAUAUCAUAACCAUAUUCCUUAGCAUCUGGAAGAGAUU .................((((...)))).........(.(((((((((((...))))))))))).)................................ (-10.79 = -10.96 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:26 2011