| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,654,817 – 5,654,875 |
| Length | 58 |
| Max. P | 0.996185 |
| Location | 5,654,817 – 5,654,875 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 95.52 |
| Shannon entropy | 0.07898 |
| G+C content | 0.43448 |
| Mean single sequence MFE | -17.62 |
| Consensus MFE | -17.50 |
| Energy contribution | -16.98 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.88 |
| Structure conservation index | 0.99 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.90 |
| SVM RNA-class probability | 0.996185 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5654817 58 + 23011544 CAUUUUUGUGCCCGCCAAUCGUAAAGAGUGGGGUAUAUUGUGCAAAGGGUAUAAAAGG ..(((((((((((.(((.((.....)).))).((((...))))...))))))))))). ( -18.30, z-score = -3.20, R) >droEre2.scaffold_4929 5743256 58 + 26641161 CAUUUUUGUGCCCGCCAAUCGUAAAGAGUGGGGUAUACUGUGCAAAGGGUAUGAAGGG ..((((..(((((.(((.((.....)).))).((((...))))...)))))..)))). ( -17.10, z-score = -1.79, R) >droYak2.chr2L 8786275 58 - 22324452 CAUUUUUAUACCCGCCAAUCGUAAAGAGUAGGGUAUAUUGUGCAAAGGGUAUGAAAGG ..(((((((((((.((..((.....))...))((((...))))...))))))))))). ( -16.10, z-score = -3.02, R) >droSec1.super_5 3733620 58 + 5866729 CAUUUUUGUGCCCGCCAAUCGUAAAGAGUGGGGUAUAUUGUGCAAAGGGUAUAAAAGG ..(((((((((((.(((.((.....)).))).((((...))))...))))))))))). ( -18.30, z-score = -3.20, R) >droSim1.chr2L 5447942 58 + 22036055 CAUUUUUGUGCCCGCCAAUCGUAAAGAGUGGGGUAUAUUGUGCAAAGGGUAUAAAAGG ..(((((((((((.(((.((.....)).))).((((...))))...))))))))))). ( -18.30, z-score = -3.20, R) >consensus CAUUUUUGUGCCCGCCAAUCGUAAAGAGUGGGGUAUAUUGUGCAAAGGGUAUAAAAGG ..(((((((((((.(((.((.....)).))).((((...))))...))))))))))). (-17.50 = -16.98 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:19:37 2011