| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,742,480 – 18,742,597 |
| Length | 117 |
| Max. P | 0.834609 |
| Location | 18,742,480 – 18,742,597 |
|---|---|
| Length | 117 |
| Sequences | 15 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 72.40 |
| Shannon entropy | 0.62182 |
| G+C content | 0.52965 |
| Mean single sequence MFE | -37.84 |
| Consensus MFE | -18.00 |
| Energy contribution | -16.60 |
| Covariance contribution | -1.40 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.85 |
| SVM RNA-class probability | 0.834609 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18742480 117 + 24543557 AAGAAUUCGUGGCCGCCGGUGAUCACCUGGUGCACCAUUGUCCAACUUGGCAGUGGGCCGCUGGCGAUGAGACCAAGACAAAACCCUACCUACCAAAGGGUAUGUGCUGCGAUUUUC--- ..(((.(((..(((((((((((((....)))((.((((((((......))))))))))))))))))...........(((..(((((.........))))).)))))..))).))).--- ( -42.70, z-score = -1.94, R) >droAna3.scaffold_13337 4607821 117 - 23293914 AGGAGUUUGUGGCAGCUGGAGAUCACUUGGUGCAUCAUUGUCCCACUUGGCAAUGGGCUGCCGGCGAUGAAACCAAAACGAAACCUUAUUUACCCAAAGGUGACUACUGCGAUUUGC--- ....((..((.((((.(((.......(((((...((((((((......((((......)))))))))))).))))).............(((((....)))))))))))).))..))--- ( -31.20, z-score = 0.35, R) >droEre2.scaffold_4784 10579950 117 - 25762168 AGGAGUUCGUGGCCGCCGGUGAUCACCUGGUGCACCACUGUCCCACUUGGCAGUGGGCGGCUGGCGAUGAGACGAAGACGAAACCCUACCUACCAAAGGGCAAGUGCUGCGAUUUUC--- .((((.(((..(((((((((.(((....)))((.((((((((......)))))))))).)))))))...........((....((((.........))))...))))..))).))))--- ( -42.70, z-score = -0.46, R) >droYak2.chr3L 8875597 117 - 24197627 AGGAAUUCGUGGCCGCCGGAGAUCACCUGGUGCAUCACUGCCCAACUUGGCAGUGGGCCGCUGGCGAUGAGACGAAGACGAAACCCUACCUACCAAAGGGUAAGUGCUGCGAUUUGC--- .(.((.(((..((((((((.((((....)))((.((((((((......))))))))))).))))))...........((...(((((.........)))))..))))..))).)).)--- ( -40.80, z-score = -0.87, R) >droSec1.super_19 715650 117 + 1257711 AGGAAUUCGUGGCCGCCGGUGAUCACCUGGUGCACCAUUGUCCCACUUGGCAGUGGGCCGCUGGCGAUGAGACGAAGACAAAACCUUACCUACCAAAGGGUGUGUGCUGCGAUUUGC--- .(.((.(((..(((((((((((((....)))((.((((((((......))))))))))))))))))...........(((...((((........))))...)))))..))).)).)--- ( -42.30, z-score = -0.89, R) >droSim1.chr3L 18050302 117 + 22553184 AGGAAUUCGUGGCCGCCGGUGAUCACCUGGUGCACCAUUGUCCCACUUGGCAGUGGGCCGCUGGCGAUGAGACGAAGACAAAACCCUACCUACCAAAGGGUAUGUGCUGCGAUUUGC--- .(.((.(((..(((((((((((((....)))((.((((((((......))))))))))))))))))...........(((..(((((.........))))).)))))..))).)).)--- ( -42.70, z-score = -1.21, R) >droPer1.super_9 1124400 117 - 3637205 AGGAGUUUGUGGCAGCGGGCGAUCACUUAGUACACCAUUGCCCCACCUGGCAGUGGGCGGCGGGAGAUGAUACGAAAACAAAACCGUACUUACCGAAGGGUGAGUAAUGCGACGCGA--- ........((.(((((((.(((((((((.((...((((((((......))))))))...))..))).)))).)).........))))(((((((....)))))))..))).))....--- ( -43.60, z-score = -2.26, R) >dp4.chrXR_group6 9092245 117 - 13314419 AGGAGUUUGUGGCAGCGGGCGAUCACUUAGUACACCAUUGCCCCACCUGGCAGUGGGCGGCGGGAGAUGAUACGAAAACAAAACCGUACUUACCGAAGGGUGAGUAAUGCGACGCGA--- ........((.(((((((.(((((((((.((...((((((((......))))))))...))..))).)))).)).........))))(((((((....)))))))..))).))....--- ( -43.60, z-score = -2.26, R) >droWil1.scaffold_180949 1577200 120 + 6375548 AGGAAUUUGUAGCAGCCGGUGACCAUUUGGUCCAUCAUUGUCCCACCUGGCAAUGGGCAGCUGGCGAUGAGACUAAAACGAAACCAUACUUACCAAAGGGUAAAACAUAACACACACACA .((..(((((....((((((((((....))))..((((((((......))))))))...))))))(......)....))))).))....(((((....)))))................. ( -27.90, z-score = 0.28, R) >droVir3.scaffold_13049 7046445 108 - 25233164 AGGAAUUUGUGGCAGCUGGUGACCACUUAGUCCACCAUUGUCCCACUUGGCAGUGGGCGGCGGGCGAUGAAAGCAAAACAAAGCCGUACUUGCCAAAGGGUAAAGAAA------------ .(((....((((((.....)).))))....))).((((((((......))))))))(((((..((.......))........)))))..(((((....))))).....------------ ( -33.50, z-score = -0.01, R) >droMoj3.scaffold_6680 1002038 106 - 24764193 AGGAAUUCGUUGCAGCAGGUGAUCACUUAGUUCACCAUUGCCCUACUUGGCAGUGGGCGGCUGGCGAUGAAAGCAAAACAAAAACAUAUUUGCCAAAGGGUGGGUA-------------- ..(..(((((((((((.(((((.(.....).)))))..(((((.(((....))))))))))).))))))))..)............((((..((....))..))))-------------- ( -35.90, z-score = -1.79, R) >droGri2.scaffold_15110 323965 108 - 24565398 AGGACUUUGUGGCAGCCGGUGAUCACUUGGUGCAUCACUGUCCCACUUGGCAGUGGGCAGCGGGUGAUGAAAAUAAAACAAAGCCAUACUUACCAAAAGGUAAAUGCA------------ .((.((((((.........(.((((((((.(((.((((((((......))))))))))).)))))))).).......))))))))....(((((....))))).....------------ ( -40.19, z-score = -2.67, R) >anoGam1.chr3L 27704808 114 + 41284009 AAGAGUUCAUUGCCGCCGGGGACCAUCUGACCCACCACUGUCCGACCUGGUCCUGGGCGGUGGGCGAUGAGAGCAAAAUCAAGCCUUAUCUGCCGAAGGGUAAUUGUGUUUCGU------ ..(((....(..(((((.(((((((((.(((........))).))..))))))).)))))..)((((((((.((........))))))))((((....))))...))..)))..------ ( -46.00, z-score = -2.23, R) >apiMel3.GroupUn 338903740 93 - 399230636 AGGAGUUUGUGGCAGCAGGUGAUCAUUUAGUACAUCAUUGUCCAACAUGGCAAUGGGCUACUGGUGAUGAAGAUAGAGUGAAAUCAUAUCUUC--------------------------- ....(..(((....)))..).((((((.((((..((((((((......))))))))..))))))))))(((((((((......)).)))))))--------------------------- ( -23.80, z-score = -0.65, R) >triCas2.chrUn_9 783482 93 - 915065 AAGAAUUCGUUGCGGCUGGUGACCACCUCGUGCACCAUUGCCCCACUUGGCAAUGGGCAGCUGGGGAUGAAAGCAAAGCUAAACCCUACUUAC--------------------------- (((.....(((((.((.(((....)))....)).((((((((......)))))))))))))(((((.....(((...)))...))))))))..--------------------------- ( -30.70, z-score = -1.12, R) >consensus AGGAAUUCGUGGCAGCCGGUGAUCACUUGGUGCACCAUUGUCCCACUUGGCAGUGGGCGGCUGGCGAUGAGACCAAAACAAAACCCUACUUACCAAAGGGUAAGUGCUGCGAUU__C___ .....(((((.((....((......))..((...((((((((......))))))))...))..)).)))))...................((((....)))).................. (-18.00 = -16.60 + -1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:23 2011