| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,726,462 – 18,726,573 |
| Length | 111 |
| Max. P | 0.622205 |
| Location | 18,726,462 – 18,726,573 |
|---|---|
| Length | 111 |
| Sequences | 7 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.63 |
| Shannon entropy | 0.49122 |
| G+C content | 0.48316 |
| Mean single sequence MFE | -30.74 |
| Consensus MFE | -12.46 |
| Energy contribution | -13.26 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.622205 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18726462 111 - 24543557 GGAGGCACCUUUGUGACGAAGAUGUAUCGGCUUGCU----GGCAUCCAAAGCCGUGGGCAUAGGAUCU-ACCCACGCCAUG-CCCCC--AACUUGUUGAUGAAUUAAAAAUCAGCAAAC- ((.((((.(((((...))))).......(((.....----(((.......)))(((((..........-.)))))))).))-)).))--...((((((((.........))))))))..- ( -34.70, z-score = -1.70, R) >droSim1.chr3L 18034129 112 - 22553184 GGAGGCACCUUUGUGACGAAGAUGUAUCGGCUUGCU----GGAAUCCAAAGCCGUGGGCAUAGGAUCU-CCACACGCCCUGCCCCCC--AACUUGUUGAUGAAUUAAAAAUCAGCAAAC- ((.((((.(((((...))))).......(((.((.(----(((((((...(((...)))...)))).)-))))).))).)))).)).--...((((((((.........))))))))..- ( -34.50, z-score = -1.78, R) >droSec1.super_19 699225 107 - 1257711 GGAGGCACCUUUGUG-----UAUGUAUCGGCUUGCU----GGAAUCCAAAGCCGUGGGAAUAGGAUCU-CCACACGCCCUGCCCCCC--AACUUGUUGAUGAAUUAAAAAUCAGCAAAC- ((.((((.....(((-----(.......(((((..(----((...))))))))((((((......)).-))))))))..)))).)).--...((((((((.........))))))))..- ( -31.30, z-score = -1.40, R) >droYak2.chr3L 8859420 94 + 24197627 GGAGGCACCUUUGUGACGAAGAUGUAUCGGCUUGCUGCCAGGAAUCCAACUGCCUG----------------------CCG-CCUCC--AACUUGUUGAUGAAUUAAAAAUCAGCAAAC- ((((((..(((((...))))).......(((..((.....((...))....))..)----------------------)))-)))))--...((((((((.........))))))))..- ( -29.10, z-score = -2.66, R) >droEre2.scaffold_4784 10564031 93 + 25762168 GGAGGCACCUUUGUGACGAAGAUGUAUCGGCUGGCU----GGAAUCCACAGCCGUGGG-------------------CCUG-CCCCC--AACUUGUUGAUGAAUUAAAAAUCAGCAAAC- ((.((((.(((((...))))).......((((((((----(.......)))))...))-------------------))))-)).))--...((((((((.........))))))))..- ( -31.50, z-score = -2.20, R) >droAna3.scaffold_13337 4592133 115 + 23293914 GGAGGCACCUUUGUGACGAAGAUGUAUCGGCUUGUU----UGAGCCCCGAGCCGUGGGCAUAAGGCCCACCUCGUACCUCAUCCCCCCAAACAUGUUGAUGAAUUAAAAAUCAGCAAAC- .(((((((....)))((((.........((((((..----.......))))))((((((.....)))))).)))).)))).............(((((((.........)))))))...- ( -35.70, z-score = -2.38, R) >droWil1.scaffold_180949 4825846 93 + 6375548 GUAGGUGCUUUUGUGAUGAAGAUGUAUCGGCUUGUU----UUCAUUC-UACCCGAA---------------------CUUGUGUUCUGUAA-AUGUUGAUGAAUUAAAAAUCAGCAAAGU ((((..((....))((((((((((........))))----)))))))-)))..(((---------------------(....)))).....-.(((((((.........))))))).... ( -18.40, z-score = -0.92, R) >consensus GGAGGCACCUUUGUGACGAAGAUGUAUCGGCUUGCU____GGAAUCCAAAGCCGUGGG_AUA_G__C___C_C___CCCUG_CCCCC__AACUUGUUGAUGAAUUAAAAAUCAGCAAAC_ .((..((.((((.....)))).))..))(((((...............)))))........................................(((((((.........))))))).... (-12.46 = -13.26 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:19 2011