| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,726,118 – 18,726,209 |
| Length | 91 |
| Max. P | 0.739443 |
| Location | 18,726,118 – 18,726,209 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 87.00 |
| Shannon entropy | 0.17773 |
| G+C content | 0.34959 |
| Mean single sequence MFE | -17.37 |
| Consensus MFE | -11.49 |
| Energy contribution | -12.27 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.739443 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18726118 91 - 24543557 UUUUUCCUUUGAAUGUGUUAGCCUUUGCUGAAUUCCGCCGAGACUCGAAUUUAUUUUCGAAAUAUUUUCAGCUUC--GUAUAUUUUUUGGAAA ..(((((...((((((((((((....))))).....((.((((.(((((......))))).....)))).))...--.)))))))...))))) ( -19.00, z-score = -2.17, R) >droSim1.chr3L 18033786 93 - 22553184 UUUUUCCCCUGAAUGUGUUAGCUAUUGCUGAAUUCCGCCGAGACUCCAAUUAAUUUUCGAAAUAUUUUCAGCUCCCUAUAUAUUUUUUGGAAA ..(((((...((((((((.((.....((((((......(((((...........))))).......))))))...))))))))))...))))) ( -18.22, z-score = -2.93, R) >droSec1.super_19 698895 88 - 1257711 UUUUUCCCCUGAAUGUGUUAGCUAUUGCUGAAUUCCGCCGAGACUCCAAUUAAUUUUCGAAAUAUAUUCAGCUCC--GUAU-UUUACCGUA-- ........((((((((((((((....))).........(((((...........))))).)))))))))))....--....-.........-- ( -14.90, z-score = -2.34, R) >consensus UUUUUCCCCUGAAUGUGUUAGCUAUUGCUGAAUUCCGCCGAGACUCCAAUUAAUUUUCGAAAUAUUUUCAGCUCC__GUAUAUUUUUUGGAAA ...((((...((((((((........((((((......(((((...........))))).......)))))).....))))))))...)))). (-11.49 = -12.27 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:18 2011