| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,717,578 – 18,717,683 |
| Length | 105 |
| Max. P | 0.766198 |
| Location | 18,717,578 – 18,717,683 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.71 |
| Shannon entropy | 0.31567 |
| G+C content | 0.48583 |
| Mean single sequence MFE | -23.39 |
| Consensus MFE | -19.04 |
| Energy contribution | -19.10 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.63 |
| SVM RNA-class probability | 0.766198 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18717578 105 + 24543557 AAGAUUCGUUUAAGGAUCCCUUUGAAUAUACAUAUA-UAUCCUCAAUUUUCAGAGUGUAUCCAGGUAUUGUAUCCGCUUGGUUCCGCUUCGCUCGCAGGAGCCACA .............((((.((((((((..........-...........))))))).).)))).((........))...(((((((((.......)).))))))).. ( -23.30, z-score = -1.06, R) >droSim1.chr3L 18024046 90 + 22553184 ----------------AACCUCUGCAUAUAUGUACGCUAUCCCCAAUUUUCAGAGUGUAUCCAGGUAUUGGAUCCGCUUGGUUCCGCUUCGCUCGCAGGAGCCACA ----------------......((((....))))..................(((((.((((((...)))))).)))))((((((((.......)).))))))... ( -21.70, z-score = -0.49, R) >droSec1.super_19 690323 90 + 1257711 ----------------AUCCUCUGCAUAUAUGUACACUAUCCCCAAUUUUCAAAGUGUAUCCAGGUAUUGGAUCCGCUUGGUUCCGCUUCGCUCGCAGGAGCCACA ----------------((((..(((......(((((((...............)))))))....)))..)))).....(((((((((.......)).))))))).. ( -22.66, z-score = -1.82, R) >droYak2.chr3L 8849926 86 - 24197627 ----------------ACACUCUUCAGAUACACGUG----CCUCCAUUUUCCGAGUGUAUCCAGGUAUCGGAUCCGCUUGGUUCCGCUUCGCUCGCAGGAGCCACA ----------------.................(((----.((((.....(((((((.((((.......)))).)))))))....((.......)).)))).))). ( -25.90, z-score = -2.03, R) >consensus ________________ACCCUCUGCAUAUACAUACA_UAUCCCCAAUUUUCAGAGUGUAUCCAGGUAUUGGAUCCGCUUGGUUCCGCUUCGCUCGCAGGAGCCACA ....................................................(((((.((((.......)))).)))))((((((((.......)).))))))... (-19.04 = -19.10 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:15 2011