| Sequence ID | dm3.chr3L |
|---|---|
| Location | 18,714,710 – 18,714,813 |
| Length | 103 |
| Max. P | 0.950006 |
| Location | 18,714,710 – 18,714,813 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 78.53 |
| Shannon entropy | 0.42169 |
| G+C content | 0.39138 |
| Mean single sequence MFE | -21.30 |
| Consensus MFE | -13.36 |
| Energy contribution | -14.64 |
| Covariance contribution | 1.28 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 18714710 103 - 24543557 UUCCCAUUAACUGCAUUUCAGUGAAAUGUCAACUGGAUUUUUCUCGUACCAGUUUUCCGCUUGGCUCGUCGCUGAUGUGUUUCAGUUG-CUUUAUAUGUAUUUA .......(((((((((.(((((((...(((((.((((.....((......))...)))).)))))...))))))).)))...))))))-............... ( -25.70, z-score = -3.11, R) >droSim1.chr3L 18021125 104 - 22553184 UUCCCAUUAACUGCAUUUCAGUGAAAUGUCAACUGGAUUUUUCUCGUACCAGUUUUCCGCUUGGCUCGUCGCUGAUGUGUUUCAGUUGCCUUUAUCUGUAUUUA .......(((((((((.(((((((...(((((.((((.....((......))...)))).)))))...))))))).)))...))))))................ ( -25.70, z-score = -3.32, R) >droSec1.super_19 687389 104 - 1257711 UUCCCAUUAACUGCAUUUCAGUGAAAUGUCAACUGGAUUUUUCUCGUACCAGUUUUCCGCUUGGCUCGUCGCUGAUGUGUUUCAGUUGCCUUUAUCUGUAUUUA .......(((((((((.(((((((...(((((.((((.....((......))...)))).)))))...))))))).)))...))))))................ ( -25.70, z-score = -3.32, R) >droEre2.scaffold_4784 10551845 103 + 25762168 UUCCCAUUAACAGCAUUUCAGUGAAAUGUCAACUGGAUUUUUCUUGUGCCAGUUUUCCGCUUGGCUCGUCGCUGAUGUGUUUC-UUUUUCUGUAGCUGUAUUUG .........(((((...(((((((...(((((.((((.....((......))...)))).)))))...))))))).(.....)-..........)))))..... ( -23.60, z-score = -1.93, R) >droAna3.scaffold_13337 4580931 98 + 23293914 UUCCCAUUAACUGCAUUUCAGUAAAAUGUCAACUGGA-UUUUCUUGUACCCGUUAUCCACUUGGUUCGCCACUGAU---UUU--ACUAUCCAUGUGUGUGCUCU ............((((.(((((......((((.((((-(...(........)..))))).))))......))))).---..(--((.......))).))))... ( -13.80, z-score = 0.09, R) >droWil1.scaffold_180949 1540388 101 - 6375548 UUCCUAUUAACUGCAUUUCAGUUAAAUGUCAACAGAGUGUUUUUCCAACGUGUU-UCCUUUUCUUUAUUUGGUGCUGCUUUU--ACUUGCUUCACAUUUUGCCA ......(((((((.....))))))).......((((((((....((((.(((..-..........))))))).(..((....--....))..)))))))))... ( -13.30, z-score = -0.17, R) >consensus UUCCCAUUAACUGCAUUUCAGUGAAAUGUCAACUGGAUUUUUCUCGUACCAGUUUUCCGCUUGGCUCGUCGCUGAUGUGUUUC_GUUGCCUUUAUCUGUAUUUA ............((((.(((((((...(((((.((((..................)))).)))))...))))))).))))........................ (-13.36 = -14.64 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:36:15 2011